RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 EIF2AK2P19525 551 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 GRK4P32298 578 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 USP10Q14694 798 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 EIPR1Q53HC9 387 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 XKR9Q5GH70 373 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 EMC10Q5UCC4 262 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 BROXQ5VW32 411 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 CXorf57Q6NSI4 855 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 FAM111BQ6SJ93 734 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 LRRN1Q6UXK5 716 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 CYP2R1Q6VVX0 501 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 PAGE2Q7Z2X7 111 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ABHD5Q8WTS1 349 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 ASB15Q8WXK1 588 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 LRCH3Q96II8 777 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 STRBPQ96SI9 672 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 CHP1Q99653 195 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 RTKNQ9BST9 563 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 MCMBPQ9BTE3 642 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 SPON2Q9BUD6 331 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 MAGEF1Q9HAY2 307 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 NGRNQ9NPE2 291 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 TAS2R3Q9NYW6 316 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 KIF25Q9UIL4 384 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 FLVCR2Q9UPI3 526 aa7.71□□□□□ -1.17
LIMCH1-201ENST00000313860 CASKO14936 926 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SCAMP2O15127 329 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 MYBP10242 640 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 PFKFB1P16118 471 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 CNTFP26441 200 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 HOXD10P28358 340 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SCN1BQ07699 218 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 RPA4Q13156 261 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 MEA1Q16626 185 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 GPR157Q5UAW9 335 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ARMC8Q8IUR7 673 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ZSWIM2Q8NEG5 633 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 WDR24Q96S15 920 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ZDHHC11Q9H8X9 412 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 WHRNQ9P202 907 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 NUDT5Q9UKK9 219 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 EIF3LQ9Y262 564 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 NCOA3Q9Y6Q9 1424 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 NCKAP5LQ9HCH0 1330 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 MSH6P52701 1360 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 A0A1W2PRQ8 180 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 OR5H15A6NDH6 313 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 OR5H14A6NHG9 310 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 OR5H1A6NKK0 313 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 HIST1H2ABP04908 130 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC2A2P11168 524 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC6A12P48065 614 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SEC24CP53992 1094 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 VLDLRP98155 873 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 RBL2Q08999 1139 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 TLR1Q15399 786 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SPIN3Q5JUX0 258 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 GPR107Q5VW38 600 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 HIST2H2AA3Q6FI13 130 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 HIST3H2AQ7L7L0 130 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 MCATQ8IVS2 390 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 C4orf33Q8N1A6 199 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 OR4Q3Q8NH05 313 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 TRPM4Q8TD43 1214 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ASAP3Q8TDY4 903 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ACOT12Q8WYK0 555 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 HIST1H2ACQ93077 130 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 LRRC58Q96CX6 371 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 C17orf62Q9BQA9 187 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 TRABDQ9H4I3 376 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ERVK-5Q9HDB9 667 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC39A2Q9NP94 309 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 DHDHQ9UQ10 334 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 CTTNBP2Q8WZ74 1663 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 FHOD3Q2V2M9 1422 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 CARMIL1Q5VZK9 1371 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 OR6C70A6NIJ9 312 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ZDHHC11BP0C7U3 371 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 DHRS4L1P0CG22 281 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 AVPR1AP37288 418 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 NME3Q13232 169 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ADAM9Q13443 819 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 IRAK1BP1Q5VVH5 260 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF598Q86UK7 904 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 CACUL1Q86Y37 369 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 GPALPP1Q8IXQ4 340 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 RCBTB1Q8NDN9 531 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 CEP76Q8TAP6 659 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 MYL10Q9BUA6 226 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM120AQ9BXJ8 343 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 PUS3Q9BZE2 481 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 NCDNQ9UBB6 729 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 HAO1Q9UJM8 370 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF521Q96K83 1311 aa7.71□□□□□ -1.18
LIMCH1-201ENST00000313860 TESPA1A2RU30 521 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 E9PI62 339 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 GRID2O43424 1007 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 RGS9O75916 674 aaPredicted RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms