RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SAE1Q9UBE0 346 aaPredicted RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 SUN2Q9UH99 717 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 PLA2G4CQ9UP65 541 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 PRPSAP2O60256 369 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 MAN1A2O60476 641 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 CCNT2O60583 730 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 H6PDO95479 791 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 GATMP50440 423 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 MGAT3Q09327 533 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 BNIP3Q12983 259 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 ADGRE1Q14246 886 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 ZNF829Q3KNS6 432 aaPredicted RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 MGAT5BQ3V5L5 792 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 TIGD5Q53EQ6 642 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 PPP1R26Q5T8A7 1209 aaPredicted RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 ZNF280DQ6N043 979 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 RNF19BQ6ZMZ0 732 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SLC35B4Q969S0 331 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 SEPT5Q99719 369 aaPredicted RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 SDCBP2Q9H190 292 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 ZNF696Q9H7X3 374 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 POLR1BQ9H9Y6 1135 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 MAN1C1Q9NR34 630 aa11.05□□□□□ -0.64
LSM3-201ENST00000306024 DDX28Q9NUL7 540 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 FAM32AQ9Y421 112 aaKnown RBP11.05□□□□□ -0.64
LSM3-201ENST00000306024 ZNF839A8K0R7 811 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 C9IYK1 514 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 NBNO60934 754 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 FAM155BO75949 473 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 ZNF23P17027 643 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 LMO2P25791 158 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 GCAP28676 217 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 MRPS15P82914 257 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 MYBPC1Q00872 1141 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 C1QBPQ07021 282 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 BST2Q10589 180 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 MAPK11Q15759 364 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 SCARA3Q6AZY7 606 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 ACTL9Q8TC94 416 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 CDKL2Q92772 493 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 C12orf43Q96C57 262 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 HERPUD2Q9BSE4 406 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 C1orf21Q9H246 121 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 NOL6Q9H6R4 1146 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 RAB6BQ9NRW1 208 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 VPS45Q9NRW7 570 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 IGSF9Q9P2J2 1179 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 AURKCQ9UQB9 309 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 CEPT1Q9Y6K0 416 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 CLDN5O00501 218 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 DENRO43583 198 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 TPST1O60507 370 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 MTA2O94776 668 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 BAIAP3O94812 1187 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 HOXC8P31273 242 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 SMTNL2Q2TAL5 461 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 EMC1Q8N766 993 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 KCTD6Q8NC69 237 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 TRPC4APQ8TEL6 797 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 RNF139Q8WU17 664 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 NSMCE3Q96MG7 304 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 TOX2Q96NM4 488 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 PPP1R10Q96QC0 940 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 PAAF1Q9BRP4 392 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 GPR88Q9GZN0 384 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 DPEP3Q9H4B8 488 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 ASNSD1Q9NWL6 643 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 DDX56Q9NY93 547 aaKnown RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 MAGED2Q9UNF1 606 aaPredicted RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 PRELID1Q9Y255 219 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 KANSL1LA0AUZ9 987 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 ME2P23368 584 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 BDNFP23560 247 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 ACADSBP45954 432 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 EMP3P54852 163 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 GPX6P59796 221 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 GNA12Q03113 381 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 TAP1Q03518 808 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 CNKSR3Q6P9H4 555 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 GABPB2Q8TAK5 448 aaPredicted RBP11.04□□□□□ -0.64
LSM3-201ENST00000306024 ACTRT2Q8TDY3 377 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 CXorf21Q9HAI6 301 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 FIS1Q9Y3D6 152 aa11.04□□□□□ -0.64
LSM3-201ENST00000306024 MYO7AQ13402 2215 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 SF3B1O75533 1304 aaKnown RBP eCLIP11.03□□□□□ -0.64
LSM3-201ENST00000306024 TCRBV9S1A1TA0A576 114 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 PIRO00625 290 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 PFDN6O15212 129 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 SPAG6O75602 509 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 FGBP02675 491 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 EN2P19622 333 aaPredicted RBP11.03□□□□□ -0.64
LSM3-201ENST00000306024 NKX3-2P78367 333 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 LDLRAP1Q5SW96 308 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 FNBP1LQ5T0N5 605 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 FAXCQ5TGI0 409 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 LRRC8EQ6NSJ5 796 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 NIPAL1Q6NVV3 410 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 GALNT18Q6P9A2 607 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 SPOCD1Q6ZMY3 1216 aa11.03□□□□□ -0.64
LSM3-201ENST00000306024 SETD3Q86TU7 594 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms