RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 HECTD3Q5T447 861 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 MTDHQ86UE4 582 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 OVCA2Q8WZ82 227 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 NSMCE3Q96MG7 304 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 PPP1R2P1Q96PQ5 205 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 MRM3Q9HC36 420 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 TRIM43BA6NCK2 446 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 F5H5T6 163 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 ITM2AO43736 263 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 C2P06681 752 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 CLTBP09497 229 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 CSF2RAP15509 400 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 SERPINB8P50452 374 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 CSE1LP55060 971 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 YBEYP58557 167 aaPredicted RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 ITKQ08881 620 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 LBRQ14739 615 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 SPOUT1Q5T280 376 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 ACBD5Q5T8D3 534 aaPredicted RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 ZNF354CQ86Y25 554 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 C10orf107Q8IVU9 208 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 TNS4Q8IZW8 715 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 TMEM151AQ8N4L1 468 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 PNPLA1Q8N8W4 532 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 PDZD8Q8NEN9 1154 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 PPHLN1Q8NEY8 458 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 PTCD2Q8WV60 388 aaKnown RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 TRIM43Q96BQ3 446 aaPredicted RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 PRR11Q96HE9 360 aaPredicted RBP6.63□□□□□ -1.35
USP47-201ENST00000305481 ZNF333Q96JL9 665 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 ZNF558Q96NG5 402 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 GPR22Q99680 433 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 TMEM120AQ9BXJ8 343 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 DONSONQ9NYP3 566 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 HSFX1Q9UBD0 423 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 YIPF1Q9Y548 306 aa6.63□□□□□ -1.35
USP47-201ENST00000305481 A0A096LPK6 155 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 LOC285095A0A1B0GVY8 99 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SIN3BO75182 1162 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 DCTN3O75935 186 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 NEBLO76041 1014 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 UNC5CO95185 931 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ATXN1LP0C7T5 689 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 GLDCP23378 1020 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 WDR5P61964 334 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 MPP1Q00013 466 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 RAB33AQ14088 237 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TAF1BQ53T94 588 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 SIRPB2Q5JXA9 342 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ATG16L1Q676U5 607 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TPGS2Q68CL5 300 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 CLNKQ7Z7G1 428 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SPNS2Q8IVW8 549 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 KIF2BQ8N4N8 673 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 OR7D4Q8NG98 312 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 OR6Y1Q8NGX8 325 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 RAB3IL1Q8TBN0 382 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 CDK5RAP1Q96SZ6 601 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 C1QTNF1Q9BXJ1 281 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 KLF16Q9BXK1 252 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 VPS45Q9NRW7 570 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 COPG2Q9UBF2 871 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 UXTQ9UBK9 157 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 HEY2Q9UBP5 337 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ABHD14A-ACY1A0A1B0GW23 586 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 AURKAO14965 403 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TIMM44O43615 452 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 LYPLA1O75608 230 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 MYL2P10916 166 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 CORO1AP31146 461 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 SLC1A2P43004 574 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 HARS2P49590 506 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 SERPINH1P50454 418 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 ARFIP2P53365 341 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ZXDBP98169 803 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 STX3Q13277 289 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 PLD1Q13393 1074 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SETDB1Q15047 1291 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TTC31Q49AM3 519 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 TBC1D1Q86TI0 1168 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 CEP97Q8IW35 865 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TRIM42Q8IWZ5 723 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 OR13J1Q8NGT2 312 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SKA1Q96BD8 255 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 TRMT2BQ96GJ1 504 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 TMEM169Q96HH4 297 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ZFRQ96KR1 1074 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 SLC22A12Q96S37 553 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 SEMA3CQ99985 751 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 HERC2P3Q9BVR0 1158 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 NACA2Q9H009 215 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 RHOJQ9H4E5 214 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ARHGEF3Q9NR81 526 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 FBXO6Q9NRD1 293 aaPredicted RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 AGO1Q9UL18 857 aaKnown RBP6.62□□□□□ -1.35
USP47-201ENST00000305481 SLC39A10Q9ULF5 831 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 MIA3Q5JRA6 1907 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 ANAPC1Q9H1A4 1944 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 MROH6A6NGR9 719 aa6.62□□□□□ -1.35
USP47-201ENST00000305481 G3V2L1 256 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms