RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PCM1Q15154 2024 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 UBE2QL1A1L167 161 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 FAM220BPB1ANY3 271 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AP1G1O43747 822 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RPS6KA4O75676 772 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CNPP09543 421 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AKR1B1P15121 316 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RAB27AP51159 221 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM25Q14258 630 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ACOX1Q15067 660 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC24Q50LG9 513 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 THAP5Q7Z6K1 395 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF410Q86VK4 478 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RIT1Q92963 219 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CIDECQ96AQ7 238 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AURKBQ96GD4 344 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MTMR9Q96QG7 549 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 REEP2Q9BRK0 252 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 IRX2Q9BZI1 471 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RGS18Q9NS28 235 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ARMC1Q9NVT9 282 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 VANGL2Q9ULK5 521 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 UBQLN1Q9UMX0 589 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ERVW-1Q9UQF0 538 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PIK3C2AO00443 1686 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ADAMDEC1O15204 470 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PDPK1O15530 556 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF862O60290 1169 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF235Q14590 738 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 KIZQ2M2Z5 673 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ASTE1Q2TB18 679 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PRR5LQ6MZQ0 368 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SMYD1Q8NB12 490 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DNERQ8NFT8 737 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DEDD2Q8WXF8 326 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SPOCK2Q92563 424 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MARK4Q96L34 752 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SPATA13Q96N96 652 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TBCDQ9BTW9 1192 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 WDR41Q9HAD4 459 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 NXF1Q9UBU9 619 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TBX20Q9UMR3 447 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MAFKO60675 156 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ASS1P00966 412 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PRR29P0C7W0 189 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PSMA1P25786 263 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 NMT1P30419 496 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 EIF2B2P49770 351 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MECP2P51608 486 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 LIPMQ5VYY2 423 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DNAJC10Q8IXB1 793 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 HIPK4Q8NE63 616 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SLC5A5Q92911 643 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 COA7Q96BR5 231 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AHCYL2Q96HN2 611 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MBOAT7Q96N66 472 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TDRD1Q9BXT4 1180 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 KCNN2Q9H2S1 579 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF221Q9UK13 617 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PCDHB12Q9Y5F1 795 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 AP4B1Q9Y6B7 739 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SDK1Q7Z5N4 2213 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 LOXHD1Q8IVV2 1947 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PARP4Q9UKK3 1724 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF335Q9H4Z2 1342 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TRIM49BA6NDI0 452 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 SIGLEC16A6NMB1 481 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 MEI4A8MW99 385 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PSMD11O00231 422 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ACSL4O60488 711 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 L1CAMP32004 1257 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 DYNLT1P63172 113 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CDH18Q13634 790 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TEAD4Q15561 434 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 OR6B2Q6IFH4 312 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 KDELC2Q7Z4H8 507 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 C11orf96Q7Z7L8 435 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZFPM1Q8IX07 1006 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CPNE9Q8IYJ1 553 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CDK20Q8IZL9 346 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF786Q8N393 782 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TAB3Q8N5C8 712 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ATPAF2Q8N5M1 289 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TRPV1Q8NER1 839 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CLPTM1LQ96KA5 538 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 STOX2Q9P2F5 926 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ARHGAP28Q9P2N2 729 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PSME2Q9UL46 239 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 RUVBL2Q9Y230 463 aaKnown RBP5.29□□□□□ -1.56
SCN1A-201ENST00000303395 PLLPQ9Y342 182 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 NR2E1Q9Y466 385 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CACNA1CQ13936 2221 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CCDC182A6NF36 153 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 KPNA6O60684 536 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 ASLP04424 464 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 CD151P48509 253 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 TKTL1P51854 596 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 GTF2BQ00403 316 aa5.29□□□□□ -1.56
SCN1A-201ENST00000303395 GRB10Q13322 594 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms