RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 MT-ND1P03886 318 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 SERPINF2P08697 491 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 GOT1P17174 413 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 LRPAP1P30533 357 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 PSME3P61289 254 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 ANKS1BQ7Z6G8 1248 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 CHPFQ8IZ52 775 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 LPCAT1Q8NF37 534 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 SKA1Q96BD8 255 aa13.59□□□□□ -0.23
HPS3-201ENST00000296051 BUD23O43709 281 aaKnown RBP13.58□□□□□ -0.23
HPS3-201ENST00000296051 KRT75O95678 551 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 ARF4P18085 180 aaPredicted RBP13.58□□□□□ -0.23
HPS3-201ENST00000296051 NR4A1P22736 598 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 RFX3P48380 749 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 DLG1Q12959 904 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 PPIGQ13427 754 aaKnown RBP eCLIP13.58□□□□□ -0.23
HPS3-201ENST00000296051 DGCR6Q14129 220 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 HECTD3Q5T447 861 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 SH3PXD2AQ5TCZ1 1133 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 MRNIPQ6NTE8 343 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 PKN3Q6P5Z2 889 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 CCDC103Q8IW40 242 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 WDR48Q8TAF3 677 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.58□□□□□ -0.23
HPS3-201ENST00000296051 PREBQ9HCU5 417 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 POMPQ9Y244 141 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 MYH7BA7E2Y1 1941 aa13.58□□□□□ -0.23
HPS3-201ENST00000296051 MYH7P12883 1935 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 MAGEC1O60732 1142 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 ITGALP20701 1170 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 CYP2C18P33260 490 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 THOP1P52888 689 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 EMC10Q5UCC4 262 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 FBXL19Q6PCT2 694 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 PACS1Q6VY07 963 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 NT5DC4Q86YG4 428 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 TMEM86AQ8N2M4 240 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 TFAP2BQ92481 460 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 PPP1R2P1Q96PQ5 205 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 ROGDIQ9GZN7 287 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 NOL11Q9H8H0 719 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 SNX15Q9NRS6 342 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 KNL1Q8NG31 2342 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 PSMD12O00232 456 aaPredicted RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 HDAC3O15379 428 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 TIPRLO75663 272 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 UNGP13051 313 aaPredicted RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 POLR2EP19388 210 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 ABL2P42684 1182 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 HADHBP55084 474 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 CTBP1Q13363 440 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 KRT72Q14CN4 511 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 TARBP2Q15633 366 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 DDR2Q16832 855 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SLC24A5Q71RS6 500 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 DHRSXQ8N5I4 330 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 AZIN2Q96A70 460 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 ZFP42Q96MM3 310 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 BRD9Q9H8M2 597 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 MRC1P22897 1456 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 A0A087WXM4 84 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 FAM149AA5PLN7 773 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 ATP6V1G1O75348 118 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 OR6B1O95007 311 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 APLP1P51693 650 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SMAD3P84022 425 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 CHRNB3Q05901 458 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 DMPKQ09013 629 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 ATAT1Q5SQI0 421 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 GRTP1Q5TC63 336 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 TIGD7Q6NT04 549 aaPredicted RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 AAGABQ6PD74 315 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 LINC00523Q86TU6 105 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 DNAJB14Q8TBM8 379 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SMG7Q92540 1137 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 PLEKHG4BQ96PX9 1271 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 HERPUD2Q9BSE4 406 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 POMKQ9H5K3 350 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 GOLGA2P5Q9HBQ8 144 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 TRMT13Q9NUP7 481 aaKnown RBP13.58□□□□□ -0.24
HPS3-201ENST00000296051 COL20A1Q9P218 1284 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SPASTQ9UBP0 616 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SRRDQ9UH36 339 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 PSMD13Q9UNM6 376 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SORCS3Q9UPU3 1222 aa13.58□□□□□ -0.24
HPS3-201ENST00000296051 SLC9A3R1O14745 358 aaPredicted RBP13.57□□□□□ -0.24
HPS3-201ENST00000296051 PCNAP12004 261 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 ZNF143P52747 638 aaPredicted RBP13.57□□□□□ -0.24
HPS3-201ENST00000296051 GPX6P59796 221 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 ARCQ7LC44 396 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 DSG4Q86SJ6 1040 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 SLC7A6OSQ96CW6 309 aaPredicted RBP13.57□□□□□ -0.24
HPS3-201ENST00000296051 LRRC39Q96DD0 335 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 GPR20Q99678 358 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 CLPBQ9H078 707 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 RBPJLQ9UBG7 517 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 RSL24D1Q9UHA3 163 aaKnown RBP13.57□□□□□ -0.24
HPS3-201ENST00000296051 TRMT6Q9UJA5 497 aaKnown RBP13.57□□□□□ -0.24
HPS3-201ENST00000296051 TRAV19A0A0A6YYK7 116 aa13.57□□□□□ -0.24
HPS3-201ENST00000296051 CXorf49A8MYA2 514 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms