RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 AHCYL1O43865 530 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 CAPGP40121 348 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 C1orf189Q5VU69 101 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 ZNF540Q8NDQ6 660 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 MCCC2Q9HCC0 563 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 EQTNQ9NQ60 294 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 CPA4Q9UI42 421 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 EFCAB6Q5THR3 1501 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 CACNA1FO60840 1977 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 ISM1B1AKI9 464 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 GCATO75600 419 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 SEC24AO95486 1093 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 IFNGP01579 166 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 ACAT1P24752 427 aaKnown RBP11.49□□□□□ -0.57
PTPN4-201ENST00000263708 MSLNQ13421 630 aaPredicted RBP11.49□□□□□ -0.57
PTPN4-201ENST00000263708 PLA2G4EQ3MJ16 856 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 NRSN1Q8IZ57 195 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 RXFP1Q9HBX9 757 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 SSR3Q9UNL2 185 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 SLC28A1O00337 649 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 VAPBO95292 243 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 C9P02748 559 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 MTA1Q13330 715 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 IL18Q14116 193 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 MEA1Q16626 185 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 CNSTQ6PJW8 725 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 PFDN2Q9UHV9 154 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 MRTO4Q9UKD2 239 aaKnown RBP11.49□□□□□ -0.57
PTPN4-201ENST00000263708 TBC1D30Q9Y2I9 924 aa11.49□□□□□ -0.57
PTPN4-201ENST00000263708 ZBTB22O15209 634 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ALAS2P22557 587 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 IRAK1P51617 712 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 FBXO47Q5MNV8 452 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 POC5Q8NA72 575 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 C5orf34Q96MH7 638 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 FAM205CA6NFA0 338 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 MECP2P51608 486 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PERM1Q5SV97 790 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PPP1R26Q5T8A7 1209 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ZFP1Q6P2D0 407 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 KCTD8Q6ZWB6 473 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ARMC10Q8N2F6 343 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ANKS1AQ92625 1134 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 DPF2Q92785 391 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 TP53INP1Q96A56 240 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 FAM84BQ96KN1 310 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PABPC3Q9H361 631 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 DKK3Q9UBP4 350 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 GATBO75879 557 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 RPL19P84098 196 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 RIPK1Q13546 671 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ADSSL1Q8N142 457 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 DNAJB3Q8WWF6 145 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 THAP1Q9NVV9 213 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 A0A096LPK6 155 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 A0A1W2PQJ5 194 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 SCAMP3O14828 347 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 LRATO95237 230 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PKNOX1P55347 436 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 MPP2Q14168 576 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 OCLNQ16625 522 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ARHGAP36Q6ZRI8 547 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 DNMT3LQ9UJW3 386 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 RECQL5O94762 991 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PTPN4P29074 926 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 GFOD2Q3B7J2 385 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PIK3R6Q5UE93 754 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 SPOCD1Q6ZMY3 1216 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 STK40Q8N2I9 435 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 TBC1D16Q8TBP0 767 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 TDRD1Q9BXT4 1180 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 GPN1Q9HCN4 374 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 BPIFA1Q9NP55 256 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 CEP152O94986 1710 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 SLC33A1O00400 549 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 TSPAN1O60635 241 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 MICAL2O94851 1124 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 EIF4BP23588 611 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 GNALP38405 381 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ZNF433Q8N7K0 673 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 CISHQ9NSE2 258 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 HSD3B1P14060 373 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ELAVL2Q12926 359 aaKnown RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 MED22Q15528 200 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 PLEKHG4BQ96PX9 1271 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ITGA11Q9UKX5 1188 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 NPC1L1Q9UHC9 1359 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 KLRC1P26715 233 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 TBX2Q13207 712 aaPredicted RBP11.48□□□□□ -0.57
PTPN4-201ENST00000263708 IL18R1Q13478 541 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 ADCY4Q8NFM4 1077 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 CDRT15Q96T59 188 aa11.48□□□□□ -0.57
PTPN4-201ENST00000263708 DCXO43602 365 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ITGA2P17301 1181 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 WDR93Q6P2C0 686 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SERPINA13PQ6UXR4 307 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SLC41A1Q8IVJ1 513 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 PHF20Q9BVI0 1012 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms