RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 KLHL5Q96PQ7 755 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SENP6Q9GZR1 1112 aaPredicted RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 ARHGAP26Q9UNA1 814 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 LZTS1Q9Y250 596 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 DTNAQ9Y4J8 743 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 MYADML2A6NDP7 307 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 HHLA1C9JL84 531 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 XPO1O14980 1071 aaKnown RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 B4GALT3O60512 393 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 CYP2C9P11712 490 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 BRCC3P46736 316 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 SLC26A2P50443 739 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 DAOAP59103 153 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 SLC5A9Q2M3M2 681 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 SPATA24Q86W54 205 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 TRIM42Q8IWZ5 723 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 DIS3LQ8TF46 1054 aaKnown RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 NR1H4Q96RI1 486 aaPredicted RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 KCNA7Q96RP8 456 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 ZDHHC7Q9NXF8 308 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 SDHDO14521 159 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 KLHL2O95198 593 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 STAU1O95793 577 aaKnown RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 MLNP12872 115 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 BDNFP23560 247 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 NOS2P35228 1153 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 ARSDP51689 593 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 CSHL1Q14406 222 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 GPC2Q8N158 579 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 MYEOVQ96EZ4 313 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 CIB1Q99828 191 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 WDR41Q9HAD4 459 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 KIAA1257Q9ULG3 409 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 SLC4A7Q9Y6M7 1214 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 PLXNB2O15031 1838 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 PDLIM1O00151 329 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 SIX3O95343 332 aaPredicted RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 MOCS2O96007 188 aaPredicted RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 CYTH1Q15438 398 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 HMBOX1Q6NT76 420 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 CHST15Q7LFX5 561 aaPredicted RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 ARHGAP12Q8IWW6 846 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 TMEM102Q8N9M5 508 aaPredicted RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 BEST2Q8NFU1 509 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 OR6J1Q8NGC5 347 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 ISL2Q96A47 359 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 CMTM5Q96DZ9 223 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 MPP4Q96JB8 637 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 PRICKLE1Q96MT3 831 aaPredicted RBP10.83□□□□□ -0.68
USP28-201ENST00000003302 CYP2S1Q96SQ9 504 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 DNAI2Q9GZS0 605 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 LRRC40Q9H9A6 602 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 LRRC4Q9HBW1 653 aa10.83□□□□□ -0.68
USP28-201ENST00000003302 FKBP6O75344 327 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 PPIDQ08752 370 aaKnown RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 MTX3Q5HYI7 312 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 CYS1Q717R9 158 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 RETREG3Q86VR2 466 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 ACMSDQ8TDX5 336 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 NSUN5Q96P11 429 aaKnown RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 LTB4R2Q9NPC1 389 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 MARCH4Q9P2E8 410 aaPredicted RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 STK39Q9UEW8 545 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 NDC80O14777 642 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 HDAC3O15379 428 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 SLC5A2P31639 672 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 SERPINB8P50452 374 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 RPS6KA3P51812 740 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 SULT2A1Q06520 285 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 AP1ARQ63HQ0 302 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 SEL1L3Q68CR1 1132 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 KLHDC10Q6PID8 442 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 RAB3IL1Q8TBN0 382 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 EXT2Q93063 718 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 SLC2A13Q96QE2 648 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 PTPN18Q99952 460 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 FERMT1Q9BQL6 677 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 FRMD8Q9BZ67 464 aaPredicted RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 RBM38Q9H0Z9 239 aaKnown RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 PCDHGA7Q9Y5G6 932 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 BTBD19C9JJ37 291 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 GPR39O43194 453 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 HNRNPRO43390 633 aaKnown RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 TPST1O60507 370 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 HLA-DQB2P05538 268 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 ZNF26P17031 533 aaPredicted RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 GRK2P25098 689 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 RPL14P50914 215 aaKnown RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 GRTP1Q5TC63 336 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 ZNF470Q6ECI4 717 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 TFAP2DQ7Z6R9 452 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 CIR1Q86X95 450 aaPredicted RBP10.82□□□□□ -0.68
USP28-201ENST00000003302 SIX6OS1Q8N1H7 587 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 LRRC52Q8N7C0 313 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 TEKT5Q96M29 485 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 HAPLN3Q96S86 360 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 GPR22Q99680 433 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 DRC3Q9H069 523 aa10.82□□□□□ -0.68
USP28-201ENST00000003302 MUC3BQ9H195 1237 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms