RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PROK1P58294 105 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 TFAP4Q01664 338 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 PON2Q15165 354 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 MST1LQ2TV78 715 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 PABPC1LQ4VXU2 614 aaKnown RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 PITRM1Q5JRX3 1037 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 KIAA1614Q5VZ46 1190 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 FOXR2Q6PJQ5 311 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 FAM43BQ6ZT52 329 aaPredicted RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 C11orf74Q86VG3 221 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 TMC8Q8IU68 726 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 NAXDQ8IW45 347 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 TRMT2AQ8IZ69 625 aaKnown RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 GALNT15Q8N3T1 639 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 CAMKK1Q8N5S9 505 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 IL31RAQ8NI17 732 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 CSGALNACT1Q8TDX6 532 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 COG1Q8WTW3 980 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 TRAPPC12Q8WVT3 735 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 GJA10Q969M2 543 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 NXPE2Q96DL1 559 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 SCLT1Q96NL6 688 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 HERC2P3Q9BVR0 1158 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 APOL6Q9BWW8 343 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 CPNE5Q9HCH3 593 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 ZFP14Q9HCL3 533 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 TRPV5Q9NQA5 729 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 IL17RBQ9NRM6 502 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 SPTLC3Q9NUV7 552 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 TBC1D13Q9NVG8 400 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 HCFC1R1Q9NWW0 138 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 PLEKHB1Q9UF11 243 aaPredicted RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 SSX2IPQ9Y2D8 614 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 MTCL1Q9Y4B5 1905 aaKnown RBP4.77□□□□□ -1.65
LINC00540-201ENST00000611481 DOCK5Q9H7D0 1870 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 NID2Q14112 1375 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 NF1P21359 2839 aa4.77□□□□□ -1.65
LINC00540-201ENST00000611481 ABCB11O95342 1321 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PTPRCP08575 1304 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 KNTC1P50748 2209 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 WDR91A4D1P6 747 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 CLEC18AA5D8T8 446 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 RRN3P2A6NIE6 340 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PRRT4C9JH25 899 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 SPECC1L-ADORA2AF8WAN1 911 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 TIMM44O43615 452 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 ATG13O75143 517 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 HNRNPA1P09651 372 aaKnown RBP eCLIP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 FAM163BP0C2L3 166 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PF4V1P10720 104 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 ALOX15P16050 662 aaPredicted RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PSMC3P17980 439 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 RPL17P18621 184 aaKnown RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 GCSHP23434 173 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 FCARP24071 287 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 SERPINB3P29508 390 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 TCF7P36402 384 aaPredicted RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 RECQLP46063 649 aaPredicted RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 LSSP48449 732 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 GLUD2P49448 558 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 DGKEP52429 567 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 HSD11B2P80365 405 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 GFPT1Q06210 699 aaPredicted RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 NEDD9Q14511 834 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 GRM4Q14833 912 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PLCB4Q15147 1175 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 CYP2A13Q16696 494 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 ARHGAP29Q52LW3 1261 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 CCDC157Q569K6 752 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PPM1LQ5SGD2 360 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 LIN9Q5TKA1 542 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 ZNF425Q6IV72 752 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 C1orf228Q6PIY5 440 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 CLEC18BQ6UXF7 455 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 VITQ6UXI7 678 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 COLGALT2Q8IYK4 626 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 LNX2Q8N448 690 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 CPA6Q8N4T0 437 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 CLEC18CQ8NCF0 446 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 OR7D4Q8NG98 312 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 NACC2Q96BF6 587 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 MSANTD3Q96H12 275 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 TNIP3Q96KP6 325 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 NOTCH4Q99466 2003 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 MEIS3Q99687 375 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 MRI1Q9BV20 369 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 SELENOOQ9BVL4 669 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 KRTAP1-5Q9BYS1 174 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 TPSD1Q9BZJ3 242 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 UNKLQ9H9P5 680 aaKnown RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 ZNF287Q9HBT7 754 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 NLRC4Q9NPP4 1024 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 ERAP1Q9NZ08 941 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 GDE1Q9NZC3 331 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 STK39Q9UEW8 545 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 MTO1Q9Y2Z2 717 aaKnown RBP4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PCDHA1Q9Y5I3 950 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PLIN4Q96Q06 1357 aa4.76□□□□□ -1.65
LINC00540-201ENST00000611481 PDCD11Q14690 1871 aaKnown RBP4.75□□□□□ -1.65
LINC00540-201ENST00000611481 MTORP42345 2549 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms