RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SLC28A2O43868 658 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 BNIP3LO60238 219 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 LETM1O95202 739 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 AFPP02771 609 aaKnown RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 NTRK1P04629 796 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ITGB2P05107 769 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SRCP12931 536 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ITGB7P26010 798 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 GNA15P30679 374 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 NOS2P35228 1153 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 PRCPP42785 496 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 CSRP3P50461 194 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SUOXP51687 545 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 CLDN6P56747 220 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 BPIFB4P59827 614 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 YPEL5P62699 121 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 CENPCQ03188 943 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 PDCLQ13371 301 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 EIF4EBP2Q13542 120 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 AUHQ13825 339 aaKnown RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 SPIDRQ14159 915 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 NR0B2Q15466 257 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ZNF284Q2VY69 593 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 C5orf22Q49AR2 442 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 TMEM259Q4ZIN3 620 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SYPL2Q5VXT5 272 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ANKRD40Q6AI12 368 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 Q6ZSR6 202 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 C11orf57Q6ZUT1 292 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 CLEC14AQ86T13 490 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ELOA2Q8IYF1 753 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 FSTL5Q8N475 847 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 PCDH20Q8N6Y1 951 aaKnown RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 MSANTD4Q8NCY6 345 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 C1orf131Q8NDD1 294 aaKnown RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 ZNF548Q8NEK5 533 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 OR2A12Q8NGT7 310 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ATL2Q8NHH9 583 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 LIN37Q96GY3 246 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 C1orf74Q96LT6 269 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SLC2A13Q96QE2 648 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 CCNL2Q96S94 520 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 PRMT1Q99873 361 aaKnown RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 ARHGAP9Q9BRR9 750 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 OSBPL1AQ9BXW6 950 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SLC13A1Q9BZW2 595 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 WDCPQ9H6R7 721 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SEPT10Q9P0V9 454 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SEPT3Q9UH03 358 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 IL36AQ9UHA7 158 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 SARDHQ9UL12 918 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ATXN7L1Q9ULK2 861 aaPredicted RBP6.43□□□□□ -1.38
CUX1-220ENST00000607092 PCDHB1Q9Y5F3 818 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.43□□□□□ -1.38
CUX1-220ENST00000607092 ILVBLA1L0T0 632 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 CPED1A4D0V7 1026 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 TMEM110-MUSTN1A8MSY1 372 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 LMO7DNF2Z398 122 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 C3orf80F5H4A9 247 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ARHGAP6O43182 974 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 DAB1O75553 588 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ZIC2O95409 532 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 ANXA6P08133 673 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ALPIP09923 528 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 VAV1P15498 845 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 PRLRP16471 622 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 JUNDP17535 347 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 CD82P27701 267 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 OR1E1P30953 314 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 L1CAMP32004 1257 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 KRT9P35527 623 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 SCNN1AP37088 669 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 MARSP56192 900 aaKnown RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 TAS2R38P59533 333 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 SKOR1P84550 965 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 PTK2Q05397 1052 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 RAD51Q06609 339 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 NME3Q13232 169 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 POLD3Q15054 466 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 ELOCQ15369 112 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 C3orf38Q5JPI3 329 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 C22orf39Q6P5X5 142 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 LVRNQ6Q4G3 990 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 PCSK4Q6UW60 755 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 GCNT7Q6ZNI0 430 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 RRAGAQ7L523 313 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 SLC26A9Q7LBE3 791 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 EFL1Q7Z2Z2 1120 aaKnown RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 SMYD4Q8IYR2 804 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 DEFB106AQ8N104 65 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ZNF397Q8NF99 534 aaPredicted RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 SPATA20Q8TB22 786 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 CLEC4CQ8WTT0 213 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ZNF606Q8WXB4 792 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 TTC9Q92623 222 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 ISG20Q96AZ6 181 aaKnown RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 ALG14Q96F25 216 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 NAF1Q96HR8 494 aaKnown RBP6.42□□□□□ -1.38
CUX1-220ENST00000607092 PPP1R13BQ96KQ4 1090 aa6.42□□□□□ -1.38
CUX1-220ENST00000607092 TIGD1Q96MW7 591 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms