RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TMEM74BQ9NUR3 256 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 FBXL12Q9NXK8 326 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 IPO11Q9UI26 975 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 HPCAL4Q9UM19 191 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 PCDH15Q96QU1 1955 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 CEP250Q9BV73 2442 aa19.84■□□□□ 0.77
SHKBP1-221ENST00000599833 PSTPIP1O43586 416 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 OXTRP30559 389 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 RGRP47804 291 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 TAS2R38P59533 333 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 GBE1Q04446 702 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 ELF2Q15723 593 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 ATXN7L2Q5T6C5 722 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 PIP5KL1Q5T9C9 394 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 SLC9A4Q6AI14 798 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 LPCAT2Q7L5N7 544 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 FAM124AQ86V42 546 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 CADM4Q8NFZ8 388 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 OR2AP1Q8NGE2 309 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 GPR174Q9BXC1 333 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 ARRDC1-AS1Q9H2J1 176 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 C6orf106Q9H6K1 298 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 IL36AQ9UHA7 158 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 RAB23Q9ULC3 237 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 FZD4Q9ULV1 537 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 PCDHGA5Q9Y5G8 931 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 SLCO1B1Q9Y6L6 691 aa19.83■□□□□ 0.77
SHKBP1-221ENST00000599833 PLXNA2O75051 1894 aa19.83■□□□□ 0.76
SHKBP1-221ENST00000599833 DFFAO00273 331 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 ARHGAP6O43182 974 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 BNIP3LO60238 219 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 RNASEH1O60930 286 aaKnown RBP19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 LEFTY1O75610 366 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 ITPKAP23677 461 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 CDKN2BP42772 138 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 ADPRHP54922 357 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 ZNF33AQ06730 810 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 ADCY2Q08462 1091 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 GALNT2Q10471 571 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 TTC31Q49AM3 519 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 ARSIQ5FYB1 569 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 MFSD7Q6UXD7 560 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 HDDC3Q8N4P3 179 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 OR6K2Q8NGY2 324 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 C1orf216Q8TAB5 229 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 SMOC1Q9H4F8 434 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 HECAQ9UBI9 543 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 UBA2Q9UBT2 640 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 PILRBQ9UKJ0 227 aa19.82■□□□□ 0.76
SHKBP1-221ENST00000599833 LRRD1A4D1F6 860 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 METTL12A8MUP2 240 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 GOLGA6L6A8MZA4 724 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 INSIG1O15503 277 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 SPOPO43791 374 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 IPO7O95373 1038 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 KRT1P04264 644 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 IGHV4-34P06331 123 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 CTNNA1P35221 906 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 DHPSP49366 369 aaPredicted RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 PEX5P50542 639 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 SLC10A7Q0GE19 358 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 SPEM2Q0P670 501 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 CNTN1Q12860 1018 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 CCDC6Q16204 474 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 POM121L1PQ3SYA9 428 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 ARMCX6Q7L4S7 300 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 DSG4Q86SJ6 1040 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 DAAM2Q86T65 1068 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 ZNF354CQ86Y25 554 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 MAP7D3Q8IWC1 876 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 KATNAL2Q8IYT4 538 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 TSEN2Q8NCE0 465 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 CCDC112Q8NEF3 446 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 GRIN3AQ8TCU5 1115 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 DNASE2BQ8WZ79 361 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 RNF25Q96BH1 459 aaPredicted RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 PDLIM2Q96JY6 352 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 CALR3Q96L12 384 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 HSPA12BQ96MM6 686 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 HEPHQ9BQS7 1158 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 HERPUD2Q9BSE4 406 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 BTBD1Q9H0C5 482 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 SGK2Q9HBY8 427 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 DDX56Q9NY93 547 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 DTLQ9NZJ0 730 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 NCDNQ9UBB6 729 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 CAPN6Q9Y6Q1 641 aa19.81■□□□□ 0.76
SHKBP1-221ENST00000599833 SPINT1O43278 529 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 MAP3K13O43283 966 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 LRP3O75074 770 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 GJB3O75712 270 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 RNASEH2AO75792 299 aaKnown RBP19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 MAP3K6O95382 1288 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 SEMA4FO95754 770 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 CR2P20023 1033 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 SERPINB6P35237 376 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 MPLP40238 635 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 GARSP41250 739 aaKnown RBP19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 MYLK3Q32MK0 819 aa19.8■□□□□ 0.76
SHKBP1-221ENST00000599833 LYSMD4Q5XG99 296 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms