RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TBX18O95935 607 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 PEX11BO96011 259 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ATP5BP06576 529 aaKnown RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 HMBSP08397 361 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 CLTBP09497 229 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 BGNP21810 368 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 TYK2P29597 1187 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ALDH1A3P47895 512 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 HARS2P49590 506 aaKnown RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 WNT3AP56704 352 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 CREMQ03060 361 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 BNIP1Q12981 228 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 SLC14A2Q15849 920 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 TAF12Q16514 161 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ALFQ53S48 1182 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 KDELC1Q6UW63 502 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 CES3Q6UWW8 571 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 RANBP10Q6VN20 620 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 CDHR3Q6ZTQ4 885 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 NLRP9Q7RTR0 991 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 TFAP2DQ7Z6R9 452 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ZNF354CQ86Y25 554 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 CNTN4Q8IWV2 1026 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 UNC5BQ8IZJ1 945 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 SLC39A11Q8N1S5 342 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 DCLK2Q8N568 766 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 SPATA22Q8NHS9 363 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ZNF461Q8TAF7 563 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 SREK1Q8WXA9 508 aaKnown RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 IGSF8Q969P0 613 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 TOP1MTQ969P6 601 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 MFSD3Q96ES6 412 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 HMCESQ96FZ2 354 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 IMP4Q96G21 291 aaKnown RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 MYRFLQ96LU7 910 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ZNF512Q96ME7 567 aaPredicted RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 APOL2Q9BQE5 337 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 SIKE1Q9BRV8 207 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 FAM167BQ9BTA0 163 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 NACA2Q9H009 215 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 MAGEH1Q9H213 219 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 CCSER2Q9H7U1 834 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 NT5MQ9NPB1 228 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 UXTQ9UBK9 157 aaPredicted RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 ZNF212Q9UDV6 495 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 MAGED2Q9UNF1 606 aaPredicted RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 MTO1Q9Y2Z2 717 aaKnown RBP11.43□□□□□ -0.58
LIG3-204ENST00000585740 MYLKQ15746 1914 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 ANAPC1Q9H1A4 1944 aa11.43□□□□□ -0.58
LIG3-204ENST00000585740 EYSQ5T1H1 3165 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 HEATR9A2RTY3 570 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 ZNF840PA6NDX5 716 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 HNRNPCL1O60812 293 aaKnown RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 SIN3BO75182 1162 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 PMPCBO75439 489 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CNTN5O94779 1100 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 PAPSS2O95340 614 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 LATS1O95835 1130 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 MT-CYBP00156 380 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 ALDOAP04075 364 aaKnown RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 URODP06132 367 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 APOA4P06727 396 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 TPH1P17752 444 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 NMBRP28336 390 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 OR1E1P30953 314 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 PBX3P40426 434 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 ARFIP2P53365 341 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CDH4P55283 916 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 TMPRSS15P98073 1019 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 SF3A3Q12874 501 aaKnown RBP eCLIP11.42□□□□□ -0.58
LIG3-204ENST00000585740 PLD1Q13393 1074 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 OLIG2Q13516 323 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 SERINC3Q13530 473 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 THOC5Q13769 683 aaKnown RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 RAB33AQ14088 237 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 PDE1CQ14123 709 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 BTG3Q14201 252 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 TTC31Q49AM3 519 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 HSP90AA5PQ58FG0 334 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 FAM133BQ5BKY9 247 aaKnown RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 N4BP2L1Q5TBK1 243 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 KIAA0930Q6ICG6 404 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 DENND5AQ6IQ26 1287 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CHST9Q7L1S5 443 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CRLF3Q8IUI8 442 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 LGI2Q8N0V4 545 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 PPP1R14CQ8TAE6 165 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CALML6Q8TD86 181 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 ZNF689Q96CS4 500 aaPredicted RBP11.42□□□□□ -0.58
LIG3-204ENST00000585740 MRGPRX2Q96LB1 330 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 RMDN2Q96LZ7 410 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 TSNARE1Q96NA8 513 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 LRRC37BQ96QE4 947 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CLSTN3Q9BQT9 956 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 RHOJQ9H4E5 214 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 FAM96AQ9H5X1 160 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 ATP13A1Q9HD20 1204 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 CHRAC1Q9NRG0 131 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 SNX15Q9NRS6 342 aa11.42□□□□□ -0.58
LIG3-204ENST00000585740 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms