RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RAP1GAP2Q684P5 730 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 CXorf57Q6NSI4 855 aaKnown RBP18.46■□□□□ 0.55
CLK3-227ENST00000570296 CCNJLQ8IV13 435 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 FSTL5Q8N475 847 aaPredicted RBP18.46■□□□□ 0.55
CLK3-227ENST00000570296 IL22RA1Q8N6P7 574 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 DENND6BQ8NEG7 585 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 DQX1Q8TE96 717 aaKnown RBP18.46■□□□□ 0.55
CLK3-227ENST00000570296 ALG14Q96F25 216 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 PPP1R16AQ96I34 528 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 XPO7Q9UIA9 1087 aaKnown RBP18.46■□□□□ 0.55
CLK3-227ENST00000570296 DOLKQ9UPQ8 538 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 TCAF2A6NFQ2 919 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 F5H5T6 163 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 SPTLC2O15270 562 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 DDAH2O95865 285 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 APOEP02649 317 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 GCLMP48507 274 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 VAMP7P51809 220 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 SGCGQ13326 291 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 ELOCQ15369 112 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 MAMDC2Q7Z304 686 aaPredicted RBP18.45■□□□□ 0.54
CLK3-227ENST00000570296 OR2A12Q8NGT7 310 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 ASB12Q8WXK4 309 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 BTN2A3PQ96KV6 586 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 FEM1AQ9BSK4 669 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 C1QTNF2Q9BXJ5 285 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 AKAP7Q9P0M2 348 aaPredicted RBP18.45■□□□□ 0.54
CLK3-227ENST00000570296 SIRPGQ9P1W8 387 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 HS3ST2Q9Y278 367 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 FRMD4BQ9Y2L6 1034 aa18.45■□□□□ 0.54
CLK3-227ENST00000570296 NR3C1P04150 777 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 GNLYP22749 145 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 NEK3P51956 506 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 FAXCQ5TGI0 409 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 HEATR4Q86WZ0 1026 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 SLITRK4Q8IW52 837 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 PCDH19Q8TAB3 1148 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 UBA3Q8TBC4 463 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 APOBEC4Q8WW27 367 aaKnown RBP18.44■□□□□ 0.54
CLK3-227ENST00000570296 APPL1Q9UKG1 709 aa18.44■□□□□ 0.54
CLK3-227ENST00000570296 PNMA8BQ9ULN7 279 aaPredicted RBP18.44■□□□□ 0.54
CLK3-227ENST00000570296 AGRPO00253 132 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 MAPK13O15264 365 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 AP1G1O43747 822 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 SEMA7AO75326 666 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 CNTN5O94779 1100 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 PRKCGP05129 697 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 ALPIP09923 528 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 RNF224P0DH78 156 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 ADRB3P13945 408 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 PPP3CAQ08209 521 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 RABGAP1LQ5R372 815 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 CIR1Q86X95 450 aaPredicted RBP18.43■□□□□ 0.54
CLK3-227ENST00000570296 SLC45A3Q96JT2 553 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 ZNF768Q9H5H4 540 aaKnown RBP18.43■□□□□ 0.54
CLK3-227ENST00000570296 VPS28Q9UK41 221 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 PCDHGA3Q9Y5H0 932 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 OR51B4Q9Y5P0 310 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 FADS3Q9Y5Q0 445 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 RNF215Q9Y6U7 377 aa18.43■□□□□ 0.54
CLK3-227ENST00000570296 PVALEFA0A1B0GWK0 134 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 FBXO21O94952 628 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 FYNP06241 537 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 CELA2BP08218 269 aaPredicted RBP18.42■□□□□ 0.54
CLK3-227ENST00000570296 SRCP12931 536 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 BLKP51451 505 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 YPEL5P62699 121 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 PPARDQ03181 441 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 SEPT6Q14141 434 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 PHF19Q5T6S3 580 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 CEP135Q66GS9 1140 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 MACC1Q6ZN28 852 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 TEX19Q8NA77 164 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 IL36AQ9UHA7 158 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 GPR34Q9UPC5 381 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 SMC3Q9UQE7 1217 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 NF1P21359 2839 aa18.42■□□□□ 0.54
CLK3-227ENST00000570296 RNF103O00237 685 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 PDXKO00764 312 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 TOR1BO14657 336 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 GABBR2O75899 941 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 TRIM49P0CI25 452 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 TRIM49CP0CI26 452 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 PNLIPP16233 465 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 UGT1A3P35503 534 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 ENPEPQ07075 957 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 C16orf72Q14CZ0 275 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 ARSIQ5FYB1 569 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 INTS8Q75QN2 995 aaKnown RBP18.41■□□□□ 0.54
CLK3-227ENST00000570296 TAC4Q86UU9 113 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 CACNA2D3Q8IZS8 1091 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 EFCAB3Q8N7B9 438 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 Q8N9G6 341 aaPredicted RBP18.41■□□□□ 0.54
CLK3-227ENST00000570296 IQUBQ8NA54 791 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 CHST14Q8NCH0 376 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 GRIN3AQ8TCU5 1115 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 DHX58Q96C10 678 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 TAAR9Q96RI9 348 aa18.41■□□□□ 0.54
CLK3-227ENST00000570296 PRMT1Q99873 361 aaKnown RBP18.41■□□□□ 0.54
CLK3-227ENST00000570296 KCTD10Q9H3F6 313 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms