RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 MCEEQ96PE7 176 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 RTN4Q9NQC3 1192 aaKnown RBP22.91■■□□□ 1.26
CLN3-215ENST00000565236 MYO6Q9UM54 1294 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 WASF2Q9Y6W5 498 aa22.91■■□□□ 1.26
CLN3-215ENST00000565236 RNF103O00237 685 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 CCP110O43303 1012 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 RAMP2O60895 175 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 RXRGP48443 463 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 CCNHP51946 323 aaPredicted RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 RPL7AP62424 266 aaKnown RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 SCAPQ12770 1279 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 POLD3Q15054 466 aaPredicted RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 FILIP1LQ4L180 1135 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 EFHC2Q5JST6 749 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 DCUN1D2Q6PH85 259 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 CCNI2Q6ZMN8 369 aaPredicted RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 HORMAD1Q86X24 394 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 SPATS2Q86XZ4 545 aaKnown RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 MCOLN2Q8IZK6 566 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 RYBPQ8N488 228 aaPredicted RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 KLHDC7BQ96G42 594 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 CNPY3Q9BT09 278 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 HECAQ9UBI9 543 aaPredicted RBP22.9■■□□□ 1.26
CLN3-215ENST00000565236 ACTL7AQ9Y615 435 aa22.9■■□□□ 1.26
CLN3-215ENST00000565236 TCRBV5S1A1TA0A578 114 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 DKK1O94907 266 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 PRLRP16471 622 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 DESP17661 470 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 EPHA8P29322 1005 aaPredicted RBP22.89■■□□□ 1.25
CLN3-215ENST00000565236 L1CAMP32004 1257 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 NEK3P51956 506 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 BNIP3Q12983 259 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 ZNF284Q2VY69 593 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 FBXL19Q6PCT2 694 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 ZNF354CQ86Y25 554 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 PLPP6Q8IY26 295 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 PYROXD2Q8N2H3 581 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 MYOCQ99972 504 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 TM6SF2Q9BZW4 377 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 ZDHHC6Q9H6R6 413 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 CA5BQ9Y2D0 317 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 ZZEF1O43149 2961 aa22.89■■□□□ 1.25
CLN3-215ENST00000565236 CFAP47Q6ZTR5 3102 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 LDOC1O95751 146 aaPredicted RBP22.88■■□□□ 1.25
CLN3-215ENST00000565236 CD160O95971 181 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 ITGB7P26010 798 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 EPHB2P29323 1055 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 AKT2P31751 481 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 PPP1R2P3Q6NXS1 205 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 CAVIN1Q6NZI2 390 aaKnown RBP22.88■■□□□ 1.25
CLN3-215ENST00000565236 TMPRSS7Q7RTY8 843 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 EID2Q8N6I1 236 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 BAP1Q92560 729 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 VCPIP1Q96JH7 1222 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 NEU3Q9UQ49 428 aa22.88■■□□□ 1.25
CLN3-215ENST00000565236 DMXL2Q8TDJ6 3036 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 PTPRBP23467 1997 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 CHD5Q8TDI0 1954 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 WDFY3Q8IZQ1 3526 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 KDELR3O43731 214 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 CREB3O43889 395 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 ADRB3P13945 408 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 ZNF165P49910 485 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 PPP1R15BQ5SWA1 713 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 LEKR1Q6ZMV7 388 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 GALNT15Q8N3T1 639 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 TMEM145Q8NBT3 493 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 FEM1CQ96JP0 617 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 CNDP2Q96KP4 475 aaKnown RBP22.87■■□□□ 1.25
CLN3-215ENST00000565236 EPAS1Q99814 870 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 FZD10Q9ULW2 581 aa22.87■■□□□ 1.25
CLN3-215ENST00000565236 ZFR2Q9UPR6 939 aaKnown RBP22.87■■□□□ 1.25
CLN3-215ENST00000565236 GOLGA4Q13439 2230 aaKnown RBP22.87■■□□□ 1.25
CLN3-215ENST00000565236 PLXNB3Q9ULL4 1909 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 TRPM6Q9BX84 2022 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 CHD6Q8TD26 2715 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 ZSCAN5CA6NGD5 496 aaPredicted RBP22.86■■□□□ 1.25
CLN3-215ENST00000565236 LRRC53A6NM62 1247 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 TMCO5BA8MYB1 307 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 ENC1O14682 589 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 BUB1O43683 1085 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 THEGLP0DJG4 465 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 HNRNPA2B1P22626 353 aaKnown RBP22.86■■□□□ 1.25
CLN3-215ENST00000565236 AIF1P55008 147 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 SNRPD1P62314 119 aaKnown RBP22.86■■□□□ 1.25
CLN3-215ENST00000565236 RPS21P63220 83 aaKnown RBP22.86■■□□□ 1.25
CLN3-215ENST00000565236 SEL1L3Q68CR1 1132 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 RTL3Q8N8U3 475 aaKnown RBP22.86■■□□□ 1.25
CLN3-215ENST00000565236 OR2AP1Q8NGE2 309 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 LRIG1Q96JA1 1093 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 SYT11Q9BT88 431 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 FZD3Q9NPG1 666 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 PARVAQ9NVD7 372 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 TAS2R14Q9NYV8 317 aa22.86■■□□□ 1.25
CLN3-215ENST00000565236 SRRM3A6NNA2 597 aaPredicted RBP22.85■■□□□ 1.25
CLN3-215ENST00000565236 KRIT1O00522 736 aa22.85■■□□□ 1.25
CLN3-215ENST00000565236 POP4O95707 220 aaKnown RBP22.85■■□□□ 1.25
CLN3-215ENST00000565236 GSRP00390 522 aa22.85■■□□□ 1.25
CLN3-215ENST00000565236 MAPK8IP2Q13387 824 aaPredicted RBP22.85■■□□□ 1.25
CLN3-215ENST00000565236 ASIC2Q16515 512 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms