RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NEK3P51956 506 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 SYCP1Q15431 976 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 TMEM259Q4ZIN3 620 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 RWDD4Q6NW29 188 aaKnown RBP16.53■□□□□ 0.24
SNX1-213ENST00000561026 NLRP14Q86W24 1093 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 PLPP6Q8IY26 295 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 NDFIP2Q9NV92 336 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 KLHL11Q9NVR0 708 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 FCF1Q9Y324 198 aaKnown RBP16.53■□□□□ 0.24
SNX1-213ENST00000561026 ACTL7AQ9Y615 435 aa16.53■□□□□ 0.24
SNX1-213ENST00000561026 URB1O60287 2271 aaKnown RBP16.53■□□□□ 0.24
SNX1-213ENST00000561026 LRRC10BA6NIK2 292 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 FAM72CH0Y354 149 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 SDC3O75056 442 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 LRIG2O94898 1065 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 GJB6O95452 261 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 PLEKP08567 350 aaPredicted RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 ADRB3P13945 408 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 CKMT2P17540 419 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 L1CAMP32004 1257 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 RFC1P35251 1148 aaPredicted RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 NSFP46459 744 aaKnown RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 MAPKAPK2P49137 400 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 CCNHP51946 323 aaPredicted RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 COPB1P53618 953 aaKnown RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 HDAC4P56524 1084 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 ILKQ13418 452 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 FAM72AQ5TYM5 149 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 SEL1L3Q68CR1 1132 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 FAM72DQ6L9T8 149 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 C19orf48Q6RUI8 117 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 ABI3BPQ7Z7G0 1075 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 FAM72BQ86X60 149 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 PHF13Q86YI8 300 aaPredicted RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 SLC25A45Q8N413 288 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 ARHGEF2Q92974 986 aaKnown RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 ISG20Q96AZ6 181 aaKnown RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 MAGEB5Q9BZ81 275 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 FZD3Q9NPG1 666 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 TMEM248Q9NWD8 314 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 ADAM22Q9P0K1 906 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 LIMA1Q9UHB6 759 aaKnown RBP16.52■□□□□ 0.24
SNX1-213ENST00000561026 DNAI1Q9UI46 699 aa16.52■□□□□ 0.24
SNX1-213ENST00000561026 LGALS16A8MUM7 142 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 TRIM38O00635 465 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 DGKAP23743 735 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 HNF1BP35680 557 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 ANP32AP39687 249 aaKnown RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 CLDN6P56747 220 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 GSCP56915 257 aaPredicted RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 CLDN2P57739 230 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 RPS21P63220 83 aaKnown RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 MYL5Q02045 173 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 ZNF211Q13398 564 aaPredicted RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 CLEC16AQ2KHT3 1053 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 PROX2Q3B8N5 592 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 FBXL19Q6PCT2 694 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 SASS6Q6UVJ0 657 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 CCDC185Q8N715 623 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 ANKRD20A12PQ8NF67 263 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 NEK11Q8NG66 645 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 OR13H1Q8NG92 308 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 FAM172AQ8WUF8 416 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 FEM1CQ96JP0 617 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 PCMTD1Q96MG8 357 aaPredicted RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 SELENOOQ9BVL4 669 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 TM6SF2Q9BZW4 377 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 MAGEH1Q9H213 219 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 ANO10Q9NW15 660 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 HPCAL4Q9UM19 191 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 NEU3Q9UQ49 428 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 FADS3Q9Y5Q0 445 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 SIGLEC6O43699 453 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 AP1G1O43747 822 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 PAK4O96013 591 aaPredicted RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 GEMIN4P57678 1058 aaKnown RBP16.51■□□□□ 0.23
SNX1-213ENST00000561026 FGL2Q14314 439 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 KIAA1161Q6NSJ0 714 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 WDR59Q6PJI9 974 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 GCNT7Q6ZNI0 430 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 C3orf20Q8ND61 904 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 FAM174AQ8TBP5 190 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 NTAN1Q96AB6 310 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 TBC1D31Q96DN5 1066 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 LRIG1Q96JA1 1093 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 BMFQ96LC9 184 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 CALN1Q9BXU9 219 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 SLC17A9Q9BYT1 436 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 ZDHHC6Q9H6R6 413 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 HS3ST3A1Q9Y663 406 aa16.51■□□□□ 0.23
SNX1-213ENST00000561026 ATRXP46100 2492 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 LOC400499M0QZD8 3231 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 SIGLEC16A6NMB1 481 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 RAMP2O60895 175 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 CALB1P05937 261 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 GPD1P21695 349 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 ACP1P24666 158 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 UBXN1Q04323 297 aa16.5■□□□□ 0.23
SNX1-213ENST00000561026 TARDBPQ13148 414 aaKnown RBP eCLIP16.5■□□□□ 0.23
SNX1-213ENST00000561026 MAPK8IP2Q13387 824 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms