RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CDH9Q9ULB4 789 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MAFFQ9ULX9 164 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 R3HDM2Q9Y2K5 976 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TDRKHQ9Y2W6 561 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TMED5Q9Y3A6 229 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MRPS23Q9Y3D9 190 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PCDHB5Q9Y5E4 795 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 FAM86C2PA6NEL3 165 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ATMINO43313 823 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TPD52L2O43399 206 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 DCXO43602 365 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CBFA2T3O75081 653 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TRMUO75648 421 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MYL4P12829 197 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PTPN1P18031 435 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 BDNFP23560 247 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TUFMP49411 452 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ACADVLP49748 655 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 EPHB3P54753 998 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CENPCQ03188 943 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PPIDQ08752 370 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NFE2Q16621 373 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 STXBP5Q5T5C0 1151 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PARM1Q6UWI2 310 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 GAREM2Q75VX8 874 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ARMCX6Q7L4S7 300 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ACOT1Q86TX2 421 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CPNE8Q86YQ8 564 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SLC15A3Q8IY34 581 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF276Q8N554 614 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 METTL25Q8N6Q8 603 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 C12orf29Q8N999 325 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZFP28Q8NHY6 868 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 FBXO27Q8NI29 283 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SPATA18Q8TC71 538 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 EPS8L1Q8TE68 723 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 DQX1Q8TE96 717 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PSMG2Q969U7 264 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 MYLPFQ96A32 169 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 BTBD6Q96KE9 485 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TWNKQ96RR1 684 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PCDHB18PQ96TA0 734 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NUP85Q9BW27 656 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 BCO2Q9BYV7 579 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 GRIP2Q9C0E4 1043 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NMUR2Q9GZQ4 415 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 SUN2Q9UH99 717 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 TAGLN3Q9UI15 199 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF180Q9UJW8 692 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NOCTQ9UK39 431 aaKnown RBP7.81□□□□□ -1.16
LIMA1-216ENST00000552909 CDH7Q9ULB5 785 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 NEU2Q9Y3R4 380 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 PTPRDP23468 1912 aa7.81□□□□□ -1.16
LIMA1-216ENST00000552909 A0A1W2PRU2 124 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 KANSL1LA0AUZ9 987 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 CAPN14A8MX76 684 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 HMGA1P17096 107 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PEX2P28328 305 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 NDST1P52848 882 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 EPHA5P54756 1037 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 FOLH1Q04609 750 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 KDSRQ06136 332 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SMARCB1Q12824 385 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TRIP10Q15642 601 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 MYLK3Q32MK0 819 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PDCD4Q53EL6 469 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 EFHC1Q5JVL4 640 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM53Q6P2H8 277 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 FBXL19Q6PCT2 694 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 OLFML1Q6UWY5 402 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 Q6ZNX1 250 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PAQR9Q6ZVX9 377 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PDZD4Q76G19 769 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ALYREFQ86V81 257 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TREML1Q86YW5 311 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SPATA2LQ8IUW3 424 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ELMOD1Q8N336 334 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 MARVELD2Q8N4S9 558 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 B3GALNT2Q8NCR0 500 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SHKBP1Q8TBC3 707 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TCP10LQ8TDR4 215 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 C2orf15Q8WU43 125 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PYDC1Q8WXC3 89 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 DDX1Q92499 740 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 B3GNT5Q9BYG0 378 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 Q9H521 79 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ASAH2Q9NR71 780 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 EPS15L1Q9UBC2 864 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 CNTN6Q9UQ52 1028 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM98Q9Y2Y6 226 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SH3PXD2BA1X283 911 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 HTR3EA5X5Y0 456 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 NARSO43776 548 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 STK10O94804 968 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 P4HA1P13674 534 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PCSK6P29122 969 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SLC5A2P31639 672 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SLC1A1P43005 524 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 CLCN2P51788 898 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 FMO1Q01740 532 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms