RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF821O75541 412 aaPredicted RBP8.65□□□□□ -1.02
USP28-215ENST00000545608 ZMPSTE24O75844 475 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 ENDOD1O94919 500 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 MMEP08473 750 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 THEGLP0DJG4 465 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 UCHL3P15374 230 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 PRLRP16471 622 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 CKMT2P17540 419 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 OR1E1P30953 314 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 SCNN1AP37088 669 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 ATP1A2P50993 1020 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 TARDBPQ13148 414 aaKnown RBP eCLIP8.65□□□□□ -1.027e-8■■□□□ 14.2
USP28-215ENST00000545608 ZNF284Q2VY69 593 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 SETMARQ53H47 684 aaPredicted RBP8.65□□□□□ -1.02
USP28-215ENST00000545608 RAB6CQ53S08 254 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 HES3Q5TGS1 186 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 NEK5Q6P3R8 708 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 LRRC31Q6UY01 552 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 DPY19L3Q6ZPD9 716 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 NOP9Q86U38 636 aaKnown RBP8.65□□□□□ -1.02
USP28-215ENST00000545608 HORMAD1Q86X24 394 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 SLC25A45Q8N413 288 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 CPA5Q8WXQ8 436 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 CRELD1Q96HD1 420 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 LRIG1Q96JA1 1093 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 CFAP57Q96MR6 1250 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 SPON2Q9BUD6 331 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 C2orf49Q9BVC5 232 aaPredicted RBP8.65□□□□□ -1.02
USP28-215ENST00000545608 KRTAP3-3Q9BYR6 98 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 KRTAP3-2Q9BYR7 98 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 RAB6CQ9H0N0 254 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 TNKS2Q9H2K2 1166 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 FZD3Q9NPG1 666 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 SAMSN1Q9NSI8 373 aaKnown RBP8.65□□□□□ -1.02
USP28-215ENST00000545608 ZNF212Q9UDV6 495 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 ZFR2Q9UPR6 939 aaKnown RBP8.65□□□□□ -1.02
USP28-215ENST00000545608 ACTL7AQ9Y615 435 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 WASF2Q9Y6W5 498 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 ATRXP46100 2492 aa8.65□□□□□ -1.02
USP28-215ENST00000545608 ASPMQ8IZT6 3477 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 A0A087WV48 116 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 ILVBLA1L0T0 632 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 PES1O00541 588 aaKnown RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 SIGLEC6O43699 453 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 LEFTY1O75610 366 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 PCDH8O95206 1070 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 CD160O95971 181 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 PRNPP04156 253 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 GIMD1P0DJR0 217 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 CDK4P11802 303 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 ERCC5P28715 1186 aaPredicted RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 CLDN2P57739 230 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 NOMO3P69849 1222 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 ARF5P84085 180 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 FGL2Q14314 439 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 CRTC2Q53ET0 693 aaPredicted RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 C6orf118Q5T5N4 469 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 NAA35Q5VZE5 725 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 SEL1L3Q68CR1 1132 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 C22orf39Q6P5X5 142 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 ERN2Q76MJ5 926 aaKnown RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 PHLDB2Q86SQ0 1253 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 FAM131BQ86XD5 332 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 EMC1Q8N766 993 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 OR13H1Q8NG92 308 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 GRIN3AQ8TCU5 1115 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 BMFQ96LC9 184 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 CCDC114Q96M63 670 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 BBC3Q96PG8 261 aaPredicted RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 HAPLN3Q96S86 360 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 HDAC8Q9BY41 377 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 STK33Q9BYT3 514 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 MAGEB5Q9BZ81 275 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 DYRK4Q9NR20 520 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 KLHL11Q9NVR0 708 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 UCKL1Q9NWZ5 548 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 IL36AQ9UHA7 158 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 PAXBP1Q9Y5B6 917 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 ARID1BQ8NFD5 2236 aaPredicted RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 ASXL3Q9C0F0 2248 aa8.64□□□□□ -1.03
USP28-215ENST00000545608 COL5A1P20908 1838 aaPredicted RBP8.64□□□□□ -1.03
USP28-215ENST00000545608 ANKRD11Q6UB99 2663 aaPredicted RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 F8VZ95 297 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 TLX3O43711 291 aaPredicted RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 GJB6O95452 261 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 LSM8O95777 96 aaKnown RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 PAK4O96013 591 aaPredicted RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 CYP1A1P04798 512 aaPredicted RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 CHRNB2P17787 502 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 HNRNPA2B1P22626 353 aaKnown RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 DGKAP23743 735 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 ACP1P24666 158 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 ITPKBP27987 946 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 AKT2P31751 481 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 HNF1BP35680 557 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 ACVRL1P37023 503 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 RECQLP46063 649 aaPredicted RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 KLK7P49862 253 aa8.63□□□□□ -1.03
USP28-215ENST00000545608 SERPINH1P50454 418 aaKnown RBP8.63□□□□□ -1.03
USP28-215ENST00000545608 DNA2P51530 1060 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms