RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CCDC187A0A096LP49 1063 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 H3BM21 787 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 I6L893 689 aaPredicted RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 NTN3O00634 580 aaPredicted RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 P4HA2O15460 535 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 NOBOXO60393 691 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 LEFTY1O75610 366 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 TNFSF15O95150 251 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 SMC2O95347 1197 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 GLI1P08151 1106 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ITGA2BP08514 1039 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 CD44P16070 742 aaKnown RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 GGCXP38435 758 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 RABIFP47224 123 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 CLCN6P51797 869 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 RPS21P63220 83 aaKnown RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 CDK17Q00537 523 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 LRRC63Q05C16 580 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 NFATC3Q12968 1075 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 DEFB133Q30KQ1 61 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ZSCAN23Q3MJ62 389 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ALFQ53S48 1182 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ARSIQ5FYB1 569 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 OTUD1Q5VV17 481 aaPredicted RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 KIAA1161Q6NSJ0 714 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 C22orf39Q6P5X5 142 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 XKR5Q6UX68 686 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 DPY19L3Q6ZPD9 716 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 SLC35F3Q8IY50 421 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ATP11CQ8NB49 1132 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ZNF606Q8WXB4 792 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 RNF34Q969K3 372 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 LIN37Q96GY3 246 aaPredicted RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 CCDC114Q96M63 670 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 LENG8Q96PV6 779 aaPredicted RBP13.1□□□□□ -0.31
USP28-212ENST00000544750 TSG101Q99816 390 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 FAM204AQ9H8W3 233 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ASNSD1Q9NWL6 643 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 ACSL6Q9UKU0 697 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 FADS3Q9Y5Q0 445 aa13.1□□□□□ -0.31
USP28-212ENST00000544750 SYNJ2BP-COX16A0A087WUM0 186 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 AP1G1O43747 822 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 PAGE1O75459 146 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 GCATO75600 419 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 ADRB3P13945 408 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 JUNDP17535 347 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 NEK3P51956 506 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 PFN3P60673 137 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 KRT83P78385 493 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 MTA1Q13330 715 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 PDCLQ13371 301 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 MORC3Q14149 939 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 NR0B2Q15466 257 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 ISM2Q6H9L7 571 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 WDTC1Q8N5D0 677 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 DCAF4L2Q8NA75 395 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 EHBP1Q8NDI1 1231 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 WDR48Q8TAF3 677 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 GRIN3AQ8TCU5 1115 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 VOPP1Q96AW1 172 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 FEM1CQ96JP0 617 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 C2orf49Q9BVC5 232 aaPredicted RBP13.09□□□□□ -0.31
USP28-212ENST00000544750 C1QTNF2Q9BXJ5 285 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 TRIM4Q9C037 500 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 MUC3BQ9H195 1237 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 TCEAL2Q9H3H9 227 aaPredicted RBP13.09□□□□□ -0.31
USP28-212ENST00000544750 ACP6Q9NPH0 428 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 ANLNQ9NQW6 1124 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 DYRK4Q9NR20 520 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 COX16Q9P0S2 106 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 IL36AQ9UHA7 158 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 HOOK1Q9UJC3 728 aaKnown RBP13.09□□□□□ -0.31
USP28-212ENST00000544750 PCDHGA7Q9Y5G6 932 aa13.09□□□□□ -0.31
USP28-212ENST00000544750 ARHGEF17Q96PE2 2063 aaPredicted RBP13.09□□□□□ -0.31
USP28-212ENST00000544750 A0A0D9SEW6 157 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 MUSKO15146 869 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 ITGB7P26010 798 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 L1CAMP32004 1257 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 SRSF6Q13247 344 aaKnown RBP13.08□□□□□ -0.32
USP28-212ENST00000544750 MAPK8IP2Q13387 824 aaPredicted RBP13.08□□□□□ -0.32
USP28-212ENST00000544750 PDE1CQ14123 709 aaPredicted RBP13.08□□□□□ -0.32
USP28-212ENST00000544750 COLEC12Q5KU26 742 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 C6orf132Q5T0Z8 1188 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 FOXR1Q6PIV2 292 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 LINGO4Q6UY18 593 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 SETD3Q86TU7 594 aaPredicted RBP13.08□□□□□ -0.32
USP28-212ENST00000544750 ZSCAN30Q86W11 494 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 LURAP1LQ8IV03 231 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 RBFAQ8N0V3 343 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 LMX1AQ8TE12 382 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 ASB12Q8WXK4 309 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 NAT6Q93015 286 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 PPP1R16AQ96I34 528 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 TBATAQ96M53 351 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 CEP63Q96MT8 703 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 CPXM1Q96SM3 734 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 IL12RB2Q99665 862 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 CCDC3Q9BQI4 270 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 FAM117AQ9C073 453 aa13.08□□□□□ -0.32
USP28-212ENST00000544750 TNKS2Q9H2K2 1166 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms