RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 MED13Q9UHV7 2174 aa9.38□□□□□ -0.91
USP28-205ENST00000537706 MSI1O43347 362 aaKnown RBP9.37□□□□□ -0.91
USP28-205ENST00000537706 ATP9BO43861 1147 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CPNE6O95741 557 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CHRNA3P32297 505 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 NEK3P51956 506 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PGDP52209 483 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 TBX4P57082 545 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 DLG2Q15700 870 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 FAM133BQ5BKY9 247 aaKnown RBP9.37□□□□□ -0.91
USP28-205ENST00000537706 FSCBQ5H9T9 825 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 MS4A13Q5J8X5 152 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 MACC1Q6ZN28 852 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 SPRED1Q7Z699 444 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 XXYLT1Q8NBI6 393 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 ATL2Q8NHH9 583 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 LURAP1Q96LR2 239 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 C1QTNF7Q9BXJ2 289 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 HDAC8Q9BY41 377 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 EDEM3Q9BZQ6 932 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CLPBQ9H078 707 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 TCEAL2Q9H3H9 227 aaPredicted RBP9.37□□□□□ -0.91
USP28-205ENST00000537706 SEMA6CQ9H3T2 930 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP28-205ENST00000537706 TLK1Q9UKI8 766 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 ITPR3Q14573 2671 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 F8P00451 2351 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 K7EM74 188 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PDGFRAP16234 1089 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CYP2J2P51589 502 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CASP5P51878 434 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PFN3P60673 137 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 SNRPFP62306 86 aaKnown RBP9.37□□□□□ -0.91
USP28-205ENST00000537706 RAB41Q5JT25 222 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 BSPRYQ5W0U4 402 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PM20D1Q6GTS8 502 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 Q6ZVU0 165 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PIGZQ86VD9 579 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CCDC65Q8IXS2 484 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 ASB12Q8WXK4 309 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 EDEM1Q92611 657 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 ART4Q93070 314 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PRICKLE1Q96MT3 831 aaPredicted RBP9.37□□□□□ -0.91
USP28-205ENST00000537706 ULBP1Q9BZM6 244 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 CYP3A43Q9HB55 503 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 LATS2Q9NRM7 1088 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 PANK4Q9NVE7 773 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 B3GALT1Q9Y5Z6 326 aa9.37□□□□□ -0.91
USP28-205ENST00000537706 ITPR2Q14571 2701 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 TMEM110-MUSTN1A8MSY1 372 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 SPINT1O43278 529 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 RASGRP1O95267 797 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 BMP15O95972 392 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 FGF3P11487 239 aaPredicted RBP9.36□□□□□ -0.91
USP28-205ENST00000537706 ITGA3P26006 1051 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 PMS2P54278 862 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 RNASE9P60153 205 aaKnown RBP9.36□□□□□ -0.91
USP28-205ENST00000537706 BIRC2Q13490 618 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 EDRF1Q3B7T1 1238 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 MCTP1Q6DN14 999 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 SPNS3Q6ZMD2 512 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 SIX6OS1Q8N1H7 587 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 ZNF516Q92618 1163 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 ZPBPQ9BS86 351 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 LRIT1Q9P2V4 623 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 G3BP2Q9UN86 482 aaKnown RBP9.36□□□□□ -0.91
USP28-205ENST00000537706 DAAM1Q9Y4D1 1078 aa9.36□□□□□ -0.91
USP28-205ENST00000537706 OAS3Q9Y6K5 1087 aaKnown RBP9.36□□□□□ -0.91
USP28-205ENST00000537706 TDRD6O60522 2096 aaKnown RBP9.36□□□□□ -0.91
USP28-205ENST00000537706 LOC101059948A0A1B0GTJ6 334 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 A6NCN8 305 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 B4E171 279 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 K7ELQ4 463 aaPredicted RBP9.35□□□□□ -0.91
USP28-205ENST00000537706 NEMP1O14524 444 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 RAD51BO15315 384 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 SORBS2O94875 1100 aaKnown RBP9.35□□□□□ -0.91
USP28-205ENST00000537706 HTR1BP28222 390 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 PTGER4P35408 488 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 TXLNAP40222 546 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 TSPAN7P41732 249 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 PLK1P53350 603 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 INCA1Q0VD86 236 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 ARHGAP44Q17R89 818 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 CERCAMQ5T4B2 595 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 MSANTD2Q6P1R3 559 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 HID1Q8IV36 788 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 LGI2Q8N0V4 545 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 MMP21Q8N119 569 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 CFAP52Q8N1V2 620 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 CCDC150Q8NCX0 1101 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 HDAC11Q96DB2 347 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 DPYSL5Q9BPU6 564 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 CHMP5Q9NZZ3 219 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 BSNQ9UPA5 3926 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 POLQO75417 2590 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 PRSS44E7EML9 344 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 SPTLC2O15270 562 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 TSPAN6O43657 245 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 DPM1O60762 260 aa9.35□□□□□ -0.91
USP28-205ENST00000537706 IGLV3-27P01718 113 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms