RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 THAP12O43422 761 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 RARGP13631 454 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 KRT10P13645 584 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 MMP13P45452 471 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 EIF3BP55884 814 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 AUHQ13825 339 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TUBB8Q3ZCM7 444 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TNFAIP8L3Q5GJ75 292 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TMPRSS6Q8IU80 811 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ARFGAP2Q8N6H7 521 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 UBR7Q8N806 425 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 SLCO2A1Q92959 643 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 SIPA1Q96FS4 1042 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 PGM2Q96G03 612 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ADAM22Q9P0K1 906 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TJP2Q9UDY2 1190 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ASIC3Q9UHC3 531 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 EIF2B4Q9UI10 523 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 CNTN6Q9UQ52 1028 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 A0A087WUV0 522 aaPredicted RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 A0A1B0GVT2 93 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 GOLGA8CPA6NN73 597 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 SYNCRIPO60506 623 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ZIC2O95409 532 aaPredicted RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TBX18O95935 607 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 PENKP01210 267 aaPredicted RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 DRD4P21917 467 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 BRD2P25440 801 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 IL12RB1P42701 662 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ITGA8P53708 1063 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 CDH8P55286 799 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ENPEPQ07075 957 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ORC1Q13415 861 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TEAD4Q15561 434 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 SMAD1Q15797 465 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF667Q5HYK9 610 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ERMARDQ5T6L9 678 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 PLEKHA7Q6IQ23 1121 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 CCDC50Q8IVM0 306 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF276Q8N554 614 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 WDTC1Q8N5D0 677 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF606Q8WXB4 792 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TFAP2BQ92481 460 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF317Q96PQ6 595 aaPredicted RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 SELENOSQ9BQE4 189 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 MKRN2Q9H000 416 aaKnown RBP8.45□□□□□ -1.06
NEDD8-207ENST00000533242 DNMT3LQ9UJW3 386 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 BTBD3Q9Y2F9 522 aa8.45□□□□□ -1.06
NEDD8-207ENST00000533242 TCRBV5S1A1TA0A578 114 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ATXN7O15265 892 aaPredicted RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 CPP00450 1065 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ASS1P00966 412 aaKnown RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ZSCAN5DPP0CG00 497 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ACADMP11310 421 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ABCG1P45844 678 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 AFF3P51826 1226 aaKnown RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 COPAP53621 1224 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 AP3M2P53677 418 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 MAP3K7CLP57077 242 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 SLC20A2Q08357 652 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 EIF4HQ15056 248 aaKnown RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 KYNUQ16719 465 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF699Q32M78 642 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 FAM182AQ5T1J6 154 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 SCARA5Q6ZMJ2 495 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ACOT1Q86TX2 421 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 EXOC3L1Q86VI1 746 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF677Q86XU0 584 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 PHF13Q86YI8 300 aaPredicted RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 MARCH9Q86YJ5 346 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 CRYBG2Q8N1P7 616 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 CCDC114Q96M63 670 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 SDCBP2Q9H190 292 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 OSER1Q9NX31 292 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 MTRF1LQ9UGC7 380 aaKnown RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 DSPP15924 2871 aaKnown RBP8.44□□□□□ -1.06
NEDD8-207ENST00000533242 IGSF10Q6WRI0 2623 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 PLXNA2O75051 1894 aa8.44□□□□□ -1.06
NEDD8-207ENST00000533242 C5orf60A6NFR6 353 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 RGS16O15492 202 aaPredicted RBP8.43□□□□□ -1.06
NEDD8-207ENST00000533242 PAPSS1O43252 624 aaPredicted RBP8.43□□□□□ -1.06
NEDD8-207ENST00000533242 PCDHGA12O60330 932 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 STC2O76061 302 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 BEST1O76090 585 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 C7P10643 843 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 CCDC130P13994 396 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 ETS1P14921 441 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 MMP8P22894 467 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 GRK6P43250 576 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 GRIA4P48058 902 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 CSNK1EP49674 416 aaKnown RBP8.43□□□□□ -1.06
NEDD8-207ENST00000533242 CCT8P50990 548 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 PTK6Q13882 451 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 ZNF234Q14588 700 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 PTPRNQ16849 979 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 GEN1Q17RS7 908 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 KIF19Q2TAC6 998 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 INAVAQ3KP66 663 aa8.43□□□□□ -1.06
NEDD8-207ENST00000533242 FYB2Q5VWT5 728 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms