RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 TPM4P67936 248 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 SIM1P81133 766 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 HNRNPDQ14103 355 aaKnown RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 CYTH1Q15438 398 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 SHBQ15464 509 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 MYLK3Q32MK0 819 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 EFHC2Q5JST6 749 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 NEK5Q6P3R8 708 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 C22orf39Q6P5X5 142 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 CYP4V2Q6ZWL3 525 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 SLCO6A1Q86UG4 719 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 UMODL1-AS1Q8N2C9 162 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 PCDH20Q8N6Y1 951 aaKnown RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 RTL3Q8N8U3 475 aaKnown RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 NETO2Q8NC67 525 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 RHBDD1Q8TEB9 315 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 KLK6Q92876 244 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 SERAC1Q96JX3 654 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 PEBP4Q96S96 227 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 HDAC8Q9BY41 377 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 IFNKQ9P0W0 207 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 MYO1AQ9UBC5 1043 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 HECAQ9UBI9 543 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 IL36AQ9UHA7 158 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 PCSK1NQ9UHG2 260 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 ANGPTL2Q9UKU9 493 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 PCOLCE2Q9UKZ9 415 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 TPX2Q9ULW0 747 aaKnown RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 HPCAL4Q9UM19 191 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 ZFR2Q9UPR6 939 aaKnown RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 BTBD3Q9Y2F9 522 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 PCDHGB2Q9Y5G2 931 aa9.52□□□□□ -0.89
HDAC3-215ENST00000519474 BZW2Q9Y6E2 419 aaKnown RBP9.52□□□□□ -0.89
HDAC3-215ENST00000519474 CACNA1EQ15878 2313 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SPTBN2O15020 2390 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 WDR87Q6ZQQ6 2873 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 A0A087X0T9 212 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 A0A1B0GTQ1 180 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 RASA4BC9J798 803 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 GOLGA6L19H0YKK7 550 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 RASA4O43374 803 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 BUB1O43683 1085 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 DFNA5O60443 496 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 RAMP2O60895 175 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 RNGTTO60942 597 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 POP4O95707 220 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SERPING1P05155 500 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 FAM228BP0C875 321 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 MIPP30301 263 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 RECQLP46063 649 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CCNHP51946 323 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 ZBED6P86452 979 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CCDC15Q0P6D6 951 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 FOXC1Q12948 553 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 BNIP3Q12983 259 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SERINC3Q13530 473 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 STAT4Q14765 748 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SUZ12Q15022 739 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 ZNF284Q2VY69 593 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 ERN2Q76MJ5 926 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 GLRX5Q86SX6 157 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 TRIM69Q86WT6 500 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SPATS2Q86XZ4 545 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 NAXDQ8IW45 347 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CHCHD4Q8N4Q1 142 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 MFSD2AQ8NA29 543 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 BAHD1Q8TBE0 780 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 FNIP1Q8TF40 1166 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SETD7Q8WTS6 366 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 HMCESQ96FZ2 354 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CCDC114Q96M63 670 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 SLC39A8Q9C0K1 460 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 DHX35Q9H5Z1 703 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 AASDHPPTQ9NRN7 309 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CA5BQ9Y2D0 317 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 LUC7L2Q9Y383 392 aaKnown RBP9.51□□□□□ -0.89
HDAC3-215ENST00000519474 PCDHB9Q9Y5E1 797 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CHD5Q8TDI0 1954 aa9.51□□□□□ -0.89
HDAC3-215ENST00000519474 CACNA1AO00555 2505 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 CABIN1Q9Y6J0 2220 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 A0A1W2PQU0 124 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 FAM221BA6H8Z2 402 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 C16orf96A6NNT2 1141 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 J3KR12 359 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 SLC31A1O15431 190 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 PCDHGA12O60330 932 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 RNF8O76064 485 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 PAK4O96013 591 aaPredicted RBP9.5□□□□□ -0.89
HDAC3-215ENST00000519474 GYPCP04921 128 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 IL1R2P27930 398 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 CASP14P31944 242 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 NUDT1P36639 197 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 RXRGP48443 463 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 HCAR3P49019 387 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 C21orf59P57076 290 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 NXPH1P58417 271 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 SNRPD1P62314 119 aaKnown RBP9.5□□□□□ -0.89
HDAC3-215ENST00000519474 FGL2Q14314 439 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 ACAP1Q15027 740 aa9.5□□□□□ -0.89
HDAC3-215ENST00000519474 INO80DQ53TQ3 878 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms