RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 STAP1Q9ULZ2 295 aa8.24□□□□□ -1.09
SCN1A-207ENST00000507401 ERVW-1Q9UQF0 538 aa8.24□□□□□ -1.09
SCN1A-207ENST00000507401 NCKAP1Q9Y2A7 1128 aa8.24□□□□□ -1.09
SCN1A-207ENST00000507401 PCNX2A6NKB5 2137 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 EDDM13A0A1B0GTR0 161 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 A0A1B0GVM2 712 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 SLC35F4A4IF30 521 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 ANKRD33BA6NCL7 494 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 TCAF2A6NFQ2 919 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 F8VZ95 297 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 M0QYT0 321 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 NDUFAB1O14561 156 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 OPHN1O60890 802 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 CLDN11O75508 207 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 GRAP2O75791 330 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PRLRP16471 622 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PMLP29590 882 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 NNMTP40261 264 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PTGIRP43119 386 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 FNTAP49354 379 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 LIG3P49916 1009 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PITX1P78337 314 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 AUHQ13825 339 aaKnown RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 RBBP5Q15291 538 aaKnown RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 KRT31Q15323 416 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 SNCBQ16143 134 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PDCD2Q16342 344 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PLEKHG6Q3KR16 790 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 SLC25A52Q3SY17 297 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 CEP85LQ5SZL2 805 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 FKBP15Q5T1M5 1219 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 C9orf64Q5T6V5 341 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 SH3PXD2AQ5TCZ1 1133 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 DCAF12L1Q5VU92 463 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PAPD7Q5XG87 772 aaKnown RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 ZNF776Q68DI1 518 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 FBXL22Q6P050 247 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 IL27RAQ6UWB1 636 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 SND1Q7KZF4 910 aaKnown RBP eCLIP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 PIP4P1Q86T03 277 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 HDDC3Q8N4P3 179 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 C1orf216Q8TAB5 229 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 ERLEC1Q96DZ1 483 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 RSRC1Q96IZ7 334 aaKnown RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 TSGA10Q9BZW7 698 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 BTBD1Q9H0C5 482 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 VPS16Q9H269 839 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 HSD3B7Q9H2F3 369 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 WDCPQ9H6R7 721 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 CD93Q9NPY3 652 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 KLC4Q9NSK0 619 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 DNAAF2Q9NVR5 837 aaKnown RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 ARHGEF38Q9NXL2 777 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 LIMA1Q9UHB6 759 aaKnown RBP8.23□□□□□ -1.09
SCN1A-207ENST00000507401 TBC1D30Q9Y2I9 924 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 CACNA1EQ15878 2313 aa8.23□□□□□ -1.09
SCN1A-207ENST00000507401 ASCC3Q8N3C0 2202 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 GOLGA6L10A0A0M3HER8 536 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 DRGXA6NNA5 263 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 MEI4A8MW99 385 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 FANCGO15287 622 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 BCAT2O15382 392 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 MFAP3LO75121 409 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 PAGE1O75459 146 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 GJB3O75712 270 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 RASSF9O75901 435 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ENDOD1O94919 500 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 IPO7O95373 1038 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 CYP1A1P04798 512 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ZNF883P0CG24 379 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 MAOBP27338 520 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ACSL1P33121 698 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 MAPK8P45983 427 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 CCT5P48643 541 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 NOVA1P51513 510 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 CDH4P55283 916 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 RWDD2BP57060 319 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 JAM2P57087 298 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 CDR2Q01850 454 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ACTN3Q08043 901 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 NME3Q13232 169 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ZNF177Q13360 481 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 UAP1L1Q3KQV9 507 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ZNF569Q5MCW4 686 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 RNF219Q5W0B1 726 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 AP1ARQ63HQ0 302 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 PSAPL1Q6NUJ1 521 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 KDM7AQ6ZMT4 941 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 BNIPLQ7Z465 357 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 NOP9Q86U38 636 aaKnown RBP8.22□□□□□ -1.09
SCN1A-207ENST00000507401 XYLT1Q86Y38 959 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 APCDD1Q8J025 514 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 MINDY1Q8N5J2 469 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ZNF366Q8N895 744 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 PTPRN2Q92932 1015 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 CAVIN3Q969G5 261 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 IGSF8Q969P0 613 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 ALG14Q96F25 216 aa8.22□□□□□ -1.09
SCN1A-207ENST00000507401 RPRD1AQ96P16 312 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms