RNA–Protein interactions for RNA: ENST00000504203.5

MATR3-233, Transcript of matrin 3, human

TSL 2 BASIC

Gene MATR3, Length 2,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-233	ENST00000504203	VAPB	O95292	243 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	HSPA4L	O95757	839 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	COL6A2	P12110	1019 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	PRKAR2A	P13861	404 aa	Known RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	POLD2	P49005	469 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	PGGT1B	P53609	377 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	CLNS1A	P54105	237 aa	Known RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	SLC34A1	Q06495	639 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	USP10	Q14694	798 aa	Known RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	RAPH1	Q70E73	1250 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	MFSD6L	Q8IWD5	586 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	DENND6A	Q8IWF6	608 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	CENPL	Q8N0S6	344 aa	Predicted RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	PPHLN1	Q8NEY8	458 aa	Known RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	NRG4	Q8WWG1	115 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	LINC01599	Q8WXQ3	324 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	C8orf48	Q96LL4	319 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	THTPA	Q9BU02	230 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	FTHL17	Q9BXU8	183 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	TASP1	Q9H6P5	420 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	IPO11	Q9UI26	975 aa	Known RBP	13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	TLK1	Q9UKI8	766 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	DOCK4	Q8N1I0	1966 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203	CASP8AP2	Q9UKL3	1982 aa		13.22	□□□□□ -0.29
MATR3-233	ENST00000504203		A0A088AWK7	358 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	PMPCB	O75439	489 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	NUMB	P49757	651 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	CTBP1	Q13363	440 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SLC12A1	Q13621	1099 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	MBTPS1	Q14703	1052 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	TRMT5	Q32P41	509 aa	Known RBP	13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SDHAF4	Q5VUM1	108 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SLC24A5	Q71RS6	500 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	DCP1B	Q8IZD4	617 aa	Known RBP	13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	NUP93	Q8N1F7	819 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	UMODL1-AS1	Q8N2C9	162 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	MAPK15	Q8TD08	544 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	STYX	Q8WUJ0	223 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SREK1	Q8WXA9	508 aa	Known RBP	13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	PANX3	Q96QZ0	392 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	MYCBP	Q99417	103 aa	Predicted RBP	13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	DRC3	Q9H069	523 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	CXorf56	Q9H5V9	222 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SLC2A6	Q9UGQ3	507 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	THSD7B	Q9C0I4	1608 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	CABYR	O75952	493 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	CKB	P12277	381 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	VHL	P40337	213 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	GPR15	P49685	360 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	ACTR3	P61158	418 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	FAM189B	P81408	668 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	MPP1	Q00013	466 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	CNGA3	Q16281	694 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	DDR2	Q16832	855 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SLC9B1	Q4ZJI4	515 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	NOMO2	Q5JPE7	1267 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SNX30	Q5VWJ9	437 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	LIPM	Q5VYY2	423 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	KDELC1	Q6UW63	502 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	SLC41A1	Q8IVJ1	513 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	KCTD4	Q8WVF5	259 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	STMN2	Q93045	179 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	FATE1	Q969F0	183 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	GPR78	Q96P69	363 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	TRPV6	Q9H1D0	765 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	FBXO44	Q9H4M3	255 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	ARNT2	Q9HBZ2	717 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	BATF3	Q9NR55	127 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	TBC1D13	Q9NVG8	400 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	IL37	Q9NZH6	218 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	TLL2	Q9Y6L7	1015 aa		13.21	□□□□□ -0.29
MATR3-233	ENST00000504203	BPTF	Q12830	3046 aa		13.21	□□□□□ -0.3
MATR3-233	ENST00000504203	MEI4	A8MW99	385 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	CHRNG	P07510	517 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	ELN	P15502	786 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	ATP6V1C1	P21283	382 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	SLC1A2	P43004	574 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	CHRNA4	P43681	627 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	COPA	P53621	1224 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	PRKAA2	P54646	552 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	RAB10	P61026	200 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	USP46	P62068	366 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	SLC25A3	Q00325	362 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	HNRNPD	Q14103	355 aa	Known RBP	13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	CCDC6	Q16204	474 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	NFE2	Q16621	373 aa	Predicted RBP	13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	METTL21C	Q5VZV1	264 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	ARMC3	Q5W041	872 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	RIPOR1	Q6ZS17	1223 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	CEP97	Q8IW35	865 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	PHTF2	Q8N3S3	785 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	FSTL5	Q8N475	847 aa	Predicted RBP	13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	POU5F2	Q8N7G0	328 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	TDRD5	Q8NAT2	981 aa	Known RBP	13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	C2CD4A	Q8NCU7	369 aa	Predicted RBP	13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	ZNF333	Q96JL9	665 aa		13.2	□□□□□ -0.3
MATR3-233	ENST00000504203	FSD1L	Q9BXM9	530 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms