RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SPAG4Q9NPE6 437 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 PDLIM7Q9NR12 457 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 PCDHA10Q9Y5I2 948 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ADGRA2Q96PE1 1338 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 NCAM1P13591 858 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 PGAM1P18669 254 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ATP6V1B2P21281 511 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ASPAP45381 313 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 NKX2-5P52952 324 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 RAD23AP54725 363 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TGFB2P61812 414 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 PRKAA1Q13131 559 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SELENBP1Q13228 472 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SEMA5AQ13591 1074 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 LSMEM2Q8N112 164 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 CCNYL1Q8N7R7 359 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TERB1Q8NA31 727 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 MCPH1Q8NEM0 835 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 OR13F1Q8NGS4 319 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 URGCPQ8TCY9 931 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SH3YL1Q96HL8 342 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ZDHHC15Q96MV8 337 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 LHX5Q9H2C1 402 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SMARCAD1Q9H4L7 1026 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 UTP6Q9NYH9 597 aaKnown RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SEPT3Q9UH03 358 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TRPC5Q9UL62 973 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TMA7Q9Y2S6 64 aaKnown RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 MFHAS1Q9Y4C4 1052 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TOR1BO14657 336 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 JRKO75564 520 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 STBD1O95210 358 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SLC7A2P52569 658 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 GRSF1Q12849 480 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TRAP1Q12931 704 aaKnown RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ZNF699Q32M78 642 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 INAVAQ3KP66 663 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 AGKQ53H12 422 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 GRTP1Q5TC63 336 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 REP15Q6BDI9 236 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 NIPA1Q7RTP0 329 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 CDKL3Q8IVW4 592 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 MCRS1Q96EZ8 462 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 RPL10LQ96L21 214 aaKnown RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TWNKQ96RR1 684 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ZNF347Q96SE7 839 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 RBBP8Q99708 897 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TDRD3Q9H7E2 651 aaKnown RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 VRTNQ9H8Y1 702 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 TRPV5Q9NQA5 729 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 DNMT3BQ9UBC3 853 aaKnown RBP11.85□□□□□ -0.51
HDAC4-210ENST00000493582 KLQ9UEF7 1012 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 CD300AQ9UGN4 299 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 HMGXB4Q9UGU5 601 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 EGFL7Q9UHF1 273 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 PSME2Q9UL46 239 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 ERVK-11Q9UQG0 969 aa11.85□□□□□ -0.51
HDAC4-210ENST00000493582 SIPA1L1O43166 1804 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 PSMD11O00231 422 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 EI24O14681 340 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 GMNNO75496 209 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SBK3P0C264 359 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 YBX3P16989 372 aaKnown RBP eCLIP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CYP2F1P24903 491 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SPRP35270 261 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 ZBTB17Q13105 803 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CRY2Q49AN0 593 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 HEATR6Q6AI08 1181 aaKnown RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 OR6B2Q6IFH4 312 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 UTS2BQ765I0 119 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SPPL2CQ8IUH8 684 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 FEM1CQ96JP0 617 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CPNE1Q99829 537 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SNRNP25Q9BV90 132 aaKnown RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 POLE4Q9NR33 117 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 IFT80Q9P2H3 777 aaPredicted RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 TMX2Q9Y320 296 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 ZNF831Q5JPB2 1677 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 C2CD4BA6NLJ0 364 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CLDN25C9JDP6 229 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 USP12O75317 370 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CAPN15O75808 1086 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 ELK4P28324 431 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 EEF1DP29692 281 aaKnown RBP11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SFNP31947 248 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 PSMD8P48556 350 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 TMBIM6P55061 237 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 KRT76Q01546 638 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 STX5Q13190 355 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 VPS72Q15906 364 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 ARL13BQ3SXY8 428 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 LIPMQ5VYY2 423 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SLFN12LQ6IEE8 588 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 FRA10AC1Q70Z53 315 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 C14orf80Q86SX3 495 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 CLEC14AQ86T13 490 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SPATA6LQ8N4H0 392 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 TMEM151AQ8N4L1 468 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 COLGALT1Q8NBJ5 622 aa11.84□□□□□ -0.51
HDAC4-210ENST00000493582 SHCBP1Q8NEM2 672 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms