RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RHOJQ9H4E5 214 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 NT5MQ9NPB1 228 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 BAIAP2L1Q9UHR4 511 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 CDY1Q9Y6F8 540 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 MIA3Q5JRA6 1907 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC38A8A6NNN8 435 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 A8MUI8 341 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 LYPLA1O75608 230 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 SERPINE1P05121 402 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 C2P06681 752 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 ARNTP27540 789 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 CHRNA4P43681 627 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 ARCN1P48444 511 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC10A7Q0GE19 358 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 KDELC2Q7Z4H8 507 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 ALYREFQ86V81 257 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 LRRC43Q8N309 656 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 KLHL5Q96PQ7 755 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 SP110Q9HB58 689 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 ARL8BQ9NVJ2 186 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 FCHO1O14526 889 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 ADAM12O43184 909 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 TLR5O60602 858 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 HNRNPCL1O60812 293 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 VAPBO95292 243 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 HADHAP40939 763 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC1A6P48664 564 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 VEGFBP49765 207 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 AQP5P55064 265 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 PCSK7Q16549 785 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 MARC1Q5VT66 337 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 FAM91A1Q658Y4 838 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 TTC7BQ86TV6 843 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 CIR1Q86X95 450 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 PSMG2Q969U7 264 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 PTCD3Q96EY7 689 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 TTLL2Q9BWV7 592 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 WWP1Q9H0M0 922 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 CD248Q9HCU0 757 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 TREX1Q9NSU2 369 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC2A6Q9UGQ3 507 aa21.4■■□□□ 1.02
CCDC88B-208ENST00000492980 CXCL10P02778 98 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 CPA3P15088 417 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 GABRB3P28472 473 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 APLP1P51693 650 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 MAXP61244 160 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 NADSYN1Q6IA69 706 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 TEX26Q8N6G2 289 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 FBXO22Q8NEZ5 403 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 PABPC5Q96DU9 382 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 MYEOVQ96EZ4 313 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 RPRD1AQ96P16 312 aaPredicted RBP21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 UBE2OQ9C0C9 1292 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 NMUR2Q9GZQ4 415 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 ATP13A1Q9HD20 1204 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC39A10Q9ULF5 831 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 TRIM17Q9Y577 477 aa21.39■■□□□ 1.01
CCDC88B-208ENST00000492980 CHUKO15111 745 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 GRK2P25098 689 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 PTPN4P29074 926 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 CCL23P55773 120 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 TNK2Q07912 1038 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 KRT72Q14CN4 511 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 ACBD5Q5T8D3 534 aaPredicted RBP21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 MAGEC3Q8TD91 643 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 TUBB6Q9BUF5 446 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 TBC1D10AQ9BXI6 508 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 ARNT2Q9HBZ2 717 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 EFEMP2O95967 443 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 MYCP01106 439 aaPredicted RBP21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 AHSGP02765 367 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 MMP2P08253 660 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 MNAT1P51948 309 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 ATG14Q6ZNE5 492 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 DENND6AQ8IWF6 608 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 TNS4Q8IZW8 715 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 OR6Y1Q8NGX8 325 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 PAK6Q9NQU5 681 aaPredicted RBP21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 MTRRQ9UBK8 725 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 DNAJC16Q9Y2G8 782 aa21.38■■□□□ 1.01
CCDC88B-208ENST00000492980 RAMP2O60895 175 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 SIN3BO75182 1162 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 RALBP11234 206 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 ARRB2P32121 409 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 CD86P42081 329 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 MPP1Q00013 466 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 DSC2Q02487 901 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 ITKQ08881 620 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 IHHQ14623 411 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 POLD3Q15054 466 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 CNGA3Q16281 694 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 UGP2Q16851 508 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 KIAA0930Q6ICG6 404 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC8B1Q6J4K2 584 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 ZNF354CQ86Y25 554 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 SLC25A41Q8N5S1 370 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 PIWIL2Q8TC59 973 aaKnown RBP21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 NSL1Q96IY1 281 aa21.37■■□□□ 1.01
CCDC88B-208ENST00000492980 DEFB118Q96PH6 123 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms