RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CELF6Q96J87 481 aaKnown RBP10.91□□□□□ -0.66
USP4-214ENST00000491791 ZNF599Q96NL3 588 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 GPR22Q99680 433 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 TTPALQ9BTX7 342 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 PPP1R12CQ9BZL4 782 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 RHOJQ9H4E5 214 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 TREX1Q9NSU2 369 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 PCMTD2Q9NV79 361 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 GMIPQ9P107 970 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 TXNDC16Q9P2K2 825 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 MTRRQ9UBK8 725 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 RIMKLBQ9ULI2 386 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 PRG3Q9Y2Y8 225 aaPredicted RBP10.91□□□□□ -0.66
USP4-214ENST00000491791 TCAF1Q9Y4C2 921 aa10.91□□□□□ -0.66
USP4-214ENST00000491791 NYNRINQ9P2P1 1898 aaKnown RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 WDR91A4D1P6 747 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 DFFAO00273 331 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 USP12O75317 370 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 H2AFYO75367 372 aaKnown RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 EPOP01588 193 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 SERPINE1P05121 402 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 HLA-DQB2P05538 268 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 APOA4P06727 396 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 FGF3P11487 239 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 TYK2P29597 1187 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 HARS2P49590 506 aaKnown RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 PAPOLAP51003 745 aaKnown RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 PDE1BQ01064 536 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 STX3Q13277 289 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 CHI3L2Q15782 390 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 TBCCQ15814 346 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 HSF5Q4G112 596 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 FASTKD1Q53R41 847 aaKnown RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 N4BP2L1Q5TBK1 243 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 FSTL4Q6MZW2 842 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 CCDC91Q7Z6B0 441 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 STRA8Q7Z7C7 330 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 KCNMB4Q86W47 210 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 LMNTD2Q8IXW0 634 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 GPR65Q8IYL9 337 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 LRRC43Q8N309 656 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 DCLK2Q8N568 766 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 ATAD1Q8NBU5 361 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 PDZD8Q8NEN9 1154 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 RFWD2Q8NHY2 731 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 FBXO32Q969P5 355 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 SLC7A6OSQ96CW6 309 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 MFSD3Q96ES6 412 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 ZNF419Q96HQ0 510 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 MRGPRX2Q96LB1 330 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 MYRFLQ96LU7 910 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 RAB3IPQ96QF0 476 aaPredicted RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 PBX4Q9BYU1 374 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 SLC13A1Q9BZW2 595 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 HIPK3Q9H422 1215 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 NPHS2Q9NP85 383 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 IL23AQ9NPF7 189 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 CHRAC1Q9NRG0 131 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 SNX15Q9NRS6 342 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 NDFIP2Q9NV92 336 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 RBM22Q9NW64 420 aaKnown RBP eCLIP10.9□□□□□ -0.66
USP4-214ENST00000491791 MARCH2Q9P0N8 246 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 MID2Q9UJV3 735 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 LRFN2Q9ULH4 789 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 MAFFQ9ULX9 164 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 NUP205Q92621 2012 aa10.9□□□□□ -0.66
USP4-214ENST00000491791 SPTBN5Q9NRC6 3674 aaKnown RBP10.9□□□□□ -0.66
USP4-214ENST00000491791 TNFRSF10AO00220 468 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 CHUKO15111 745 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 FGBP02675 491 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 ACRP10323 421 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 MYL4P12829 197 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 PSMA3P25788 255 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 NMBRP28336 390 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 PTPN4P29074 926 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 TUFMP49411 452 aaKnown RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 GPR15P49685 360 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 TMPRSS15P98073 1019 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 TAF10Q12962 218 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 PCLAFQ15004 111 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 HSP90AA5PQ58FG0 334 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 RTP2Q5QGT7 225 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 TMCO4Q5TGY1 634 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 RASIP1Q5U651 963 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 CES4AQ5XG92 561 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 RSPO2Q6UXX9 243 aaPredicted RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 MTDHQ86UE4 582 aaKnown RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 ZC3HC1Q86WB0 502 aaKnown RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 CRLF3Q8IUI8 442 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 PPHLN1Q8NEY8 458 aaKnown RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 SCG3Q8WXD2 468 aaKnown RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 HERVK_113Q902F9 699 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 PTCD3Q96EY7 689 aaKnown RBP10.89□□□□□ -0.67
USP4-214ENST00000491791 VPS39Q96JC1 886 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 TMEM120AQ9BXJ8 343 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 WWP1Q9H0M0 922 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 CRISPLD1Q9H336 500 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 SLC28A3Q9HAS3 691 aa10.89□□□□□ -0.67
USP4-214ENST00000491791 COPG2Q9UBF2 871 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms