RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ACOT8O14734 319 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 METTL18O95568 372 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 PPP1R3DO95685 299 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 CD72P21854 359 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 RHBDL3P58872 404 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 SHBQ15464 509 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 FBXO43Q4G163 708 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 C10orf62Q5T681 223 aaPredicted RBP4.16□□□□□ -1.74
VPS41-213ENST00000485955 MOGAT3Q86VF5 341 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 SUGP1Q8IWZ8 645 aaKnown RBP4.16□□□□□ -1.74
VPS41-213ENST00000485955 MIGA1Q8NAN2 632 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 SETD9Q8NE22 299 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 GPT2Q8TD30 523 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 LTV1Q96GA3 475 aaPredicted RBP4.16□□□□□ -1.74
VPS41-213ENST00000485955 RBM17Q96I25 401 aaKnown RBP4.16□□□□□ -1.74
VPS41-213ENST00000485955 GFM1Q96RP9 751 aaKnown RBP4.16□□□□□ -1.74
VPS41-213ENST00000485955 GRHL1Q9NZI5 618 aa4.16□□□□□ -1.74
VPS41-213ENST00000485955 EME2A4GXA9 379 aaPredicted RBP4.15□□□□□ -1.75
VPS41-213ENST00000485955 OR6C68A6NDL8 312 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 IFITM10A6NMD0 228 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 PRSS2P07478 247 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 NAGAP17050 411 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 GJC1P36383 396 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 AARSP49588 968 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS41-213ENST00000485955 BNC1Q01954 994 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 DSC1Q08554 894 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 MYBPC2Q14324 1141 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 NAPEPLDQ6IQ20 393 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 MON1BQ7L1V2 547 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 ARMC9Q7Z3E5 817 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 RBFAQ8N0V3 343 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 ENAHQ8N8S7 591 aaPredicted RBP4.15□□□□□ -1.75
VPS41-213ENST00000485955 OR4N2Q8NGD1 307 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 TMEM163Q8TC26 289 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 THAP4Q8WY91 577 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 ATOH1Q92858 354 aaPredicted RBP4.15□□□□□ -1.75
VPS41-213ENST00000485955 SDCCAG3Q96C92 435 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 RNFT2Q96EX2 444 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 MASTLQ96GX5 879 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 MSTO1Q9BUK6 570 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 TM6SF1Q9BZW5 370 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 NPFFR1Q9GZQ6 430 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 CDT1Q9H211 546 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 KIF17Q9P2E2 1029 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 DHDHQ9UQ10 334 aa4.15□□□□□ -1.75
VPS41-213ENST00000485955 FAM157AC9JC47 383 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 ASAP2O43150 1006 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 STRNO43815 780 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 DHX16O60231 1041 aaKnown RBP4.14□□□□□ -1.75
VPS41-213ENST00000485955 ZBTB11O95625 1053 aaPredicted RBP4.14□□□□□ -1.75
VPS41-213ENST00000485955 TRAPPC10P48553 1259 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 AMTP48728 403 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 NUDT6P53370 316 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 KIF5AQ12840 1032 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 GRSF1Q12849 480 aaKnown RBP eCLIP4.14□□□□□ -1.75
VPS41-213ENST00000485955 KRT72Q14CN4 511 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 RPE65Q16518 533 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 CBWD5Q5RIA9 395 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 C8orf82Q6P1X6 216 aaPredicted RBP4.14□□□□□ -1.75
VPS41-213ENST00000485955 OR14A16Q8NHC5 309 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 RASSF8Q8NHQ8 419 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 AFG1LQ8WV93 481 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 TRAPPC12Q8WVT3 735 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 TMEM18Q96B42 140 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 PPP1R10Q96QC0 940 aaKnown RBP4.14□□□□□ -1.75
VPS41-213ENST00000485955 FAM167BQ9BTA0 163 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 PAGR1Q9BTK6 254 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 WDR6Q9NNW5 1121 aaKnown RBP4.14□□□□□ -1.75
VPS41-213ENST00000485955 ATP8A2Q9NTI2 1148 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 IL36RNQ9UBH0 155 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 CD207Q9UJ71 328 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 DERAQ9Y315 318 aa4.14□□□□□ -1.75
VPS41-213ENST00000485955 EYA2O00167 538 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 ITM2AO43736 263 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 TK1P04183 234 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 RXRAP19793 462 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 HNF1BP35680 557 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 MCM2P49736 904 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 CLCN5P51795 746 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 PRKG1Q13976 671 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 CTTNQ14247 550 aaKnown RBP4.13□□□□□ -1.75
VPS41-213ENST00000485955 PLCB4Q15147 1175 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 TAF5Q15542 800 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 ME3Q16798 604 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 GJB7Q6PEY0 223 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.13□□□□□ -1.75
VPS41-213ENST00000485955 C16orf82Q7Z2V1 217 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 FJX1Q86VR8 437 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 PALB2Q86YC2 1186 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 TMC8Q8IU68 726 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 TMED6Q8WW62 240 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 NCSTNQ92542 709 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 IL25Q9H293 177 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 C6orf106Q9H6K1 298 aaPredicted RBP4.13□□□□□ -1.75
VPS41-213ENST00000485955 MVB12BQ9H7P6 319 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 OCIAD1Q9NX40 245 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 FEM1BQ9UK73 627 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 DNAJC16Q9Y2G8 782 aa4.13□□□□□ -1.75
VPS41-213ENST00000485955 SRPRBQ9Y5M8 271 aaKnown RBP4.13□□□□□ -1.75
VPS41-213ENST00000485955 IGLV5-52A0A0A0MRZ9 124 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms