RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 HECAQ9UBI9 543 aaPredicted RBP8.42□□□□□ -1.06
SF3A1-208ENST00000485618 TRIM10Q9UDY6 481 aa8.42□□□□□ -1.06
SF3A1-208ENST00000485618 TPX2Q9ULW0 747 aaKnown RBP8.42□□□□□ -1.06
SF3A1-208ENST00000485618 NEU3Q9UQ49 428 aa8.42□□□□□ -1.06
SF3A1-208ENST00000485618 COL4A2P08572 1712 aa8.42□□□□□ -1.06
SF3A1-208ENST00000485618 DOCK4Q8N1I0 1966 aa8.42□□□□□ -1.06
SF3A1-208ENST00000485618 CACNA1IQ9P0X4 2223 aa8.42□□□□□ -1.06
SF3A1-208ENST00000485618 DNAH14Q0VDD8 3507 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 CFAP47Q6ZTR5 3102 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 ATG2BQ96BY7 2078 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 DCDC2BA2VCK2 349 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 TTC34A8MYJ7 566 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 WASH3PC4AMC7 463 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 MATN3O15232 486 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 BNIP3LO60238 219 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 SNAP91O60641 907 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 NDUFS2O75306 463 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 ZMPSTE24O75844 475 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 RHOBTB1O94844 696 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 IL1BP01584 269 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 TUBB4AP04350 444 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 SRCP12931 536 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 C5AR1P21730 350 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 GARSP41250 739 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 DPP6P42658 865 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 CTSOP43234 321 aaPredicted RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 CSNK1DP48730 415 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 STK19P49842 368 aaPredicted RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 PEX5P50542 639 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 SUOXP51687 545 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 POLR2LP62875 67 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 DYNLT1P63172 113 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 AP1B1Q10567 949 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 XRCC4Q13426 336 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 HNRNPDQ14103 355 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 GAS6Q14393 721 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 LBRQ14739 615 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 ELF2Q15723 593 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 TAZQ16635 292 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 MYLK3Q32MK0 819 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 SPDYCQ5MJ68 293 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 C9orf64Q5T6V5 341 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 MEI1Q5TIA1 1274 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 HEATR6Q6AI08 1181 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 TMEM92Q6UXU6 159 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 PRR23BQ6ZRT6 265 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 USP30Q70CQ3 517 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 CEP68Q76N32 757 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 RASSF3Q86WH2 238 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 SFTPA1Q8IWL2 248 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 NDUFAF2Q8N183 169 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 TFB1MQ8WVM0 346 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 KRT35Q92764 455 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 PPP1R2P1Q96PQ5 205 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 HHIPQ96QV1 700 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 PSMB7Q99436 277 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 OMDQ99983 421 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 HEPHQ9BQS7 1158 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 RTKNQ9BST9 563 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 HEMGNQ9BXL5 484 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 RSPH9Q9H1X1 276 aaPredicted RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 CARD9Q9H257 536 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 NOL6Q9H6R4 1146 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 ATP13A3Q9H7F0 1226 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 PARD6AQ9NPB6 346 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 PRSS16Q9NQE7 514 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 NDFIP2Q9NV92 336 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 TRMT1Q9NXH9 659 aaKnown RBP8.41□□□□□ -1.06
SF3A1-208ENST00000485618 IL36AQ9UHA7 158 aa8.41□□□□□ -1.06
SF3A1-208ENST00000485618 KIAA1549LQ6ZVL6 1849 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 hCG_1818297A0A087WSY0 165 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 C3orf70A6NLC5 250 aaPredicted RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 APOC4-APOC2K7ER74 178 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 K7ESF4 209 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 KRIT1O00522 736 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 KCNK3O14649 394 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 SLC7A4O43246 635 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 SIN3BO75182 1162 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 RPP40O75818 363 aaKnown RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 TMCC1O94876 653 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 MT-CO1P00395 513 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 APOC2P02655 101 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 HLA-EP13747 358 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 CCNB1P14635 433 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 XPAP23025 273 aaPredicted RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 CHRNA3P32297 505 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 SLC8A1P32418 973 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ACTN2P35609 894 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 MMP13P45452 471 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ARF5P84085 180 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 ITKQ08881 620 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 SPEM2Q0P670 501 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 SYCP2LQ5T4T6 812 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 NCBP2-AS2Q69YL0 99 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 LAIR1Q6GTX8 287 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 C22orf39Q6P5X5 142 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 BBS12Q6ZW61 710 aa8.4□□□□□ -1.06
SF3A1-208ENST00000485618 MMAAQ8IVH4 418 aaKnown RBP8.4□□□□□ -1.06
SF3A1-208ENST00000485618 CDKL3Q8IVW4 592 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms