RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 HDAC8Q9BY41 377 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 TPX2Q9ULW0 747 aaKnown RBP14.38□□□□□ -0.11
UPF3A-204ENST00000475218 FZD10Q9ULW2 581 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 DMTF1Q9Y222 760 aa14.38□□□□□ -0.11
UPF3A-204ENST00000475218 A0A1B0GTH6 734 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 A0A1W2PQU0 124 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 SPINT1O43278 529 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 PRNPP04156 253 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 L1CAMP32004 1257 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 BNIP3Q12983 259 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 FGL2Q14314 439 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 TMEM259Q4ZIN3 620 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CARD16Q5EG05 197 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 SEL1L3Q68CR1 1132 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 ERN2Q76MJ5 926 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 ZNF571Q7Z3V5 609 aaPredicted RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 SLFN11Q7Z7L1 901 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 PRPF39Q86UA1 669 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 MARCH9Q86YJ5 346 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 PCDH20Q8N6Y1 951 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CDC6Q99741 560 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CNPY3Q9BT09 278 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 TM6SF2Q9BZW4 377 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 TRIM7Q9C029 511 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 MYO6Q9UM54 1294 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CELSR3Q9NYQ7 3312 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CXorf51AA0A1B0GTR3 108 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 ATMINO43313 823 aaPredicted RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 DFNA5O60443 496 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 EPHA8P29322 1005 aaPredicted RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 RXRGP48443 463 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 ZNF165P49910 485 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 MAMLD1Q13495 774 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 SFMBT2Q5VUG0 894 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CYP4V2Q6ZWL3 525 aaPredicted RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 PARS2Q7L3T8 475 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 RTL3Q8N8U3 475 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 NETO2Q8NC67 525 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 OR6K2Q8NGY2 324 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 ISG20Q96AZ6 181 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 CCDC114Q96M63 670 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 MYOCQ99972 504 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 NAT10Q9H0A0 1025 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 MAGEH1Q9H213 219 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 RETREG1Q9H6L5 497 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 ERVMER34-1Q9H9K5 563 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 FZD3Q9NPG1 666 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 GDF3Q9NR23 364 aa14.37□□□□□ -0.11
UPF3A-204ENST00000475218 APOBEC2Q9Y235 224 aaKnown RBP14.37□□□□□ -0.11
UPF3A-204ENST00000475218 PKD1L2Q7Z442 2459 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 TMCO5BA8MYB1 307 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 TAF4O00268 1085 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 DDX3XO00571 662 aaKnown RBP eCLIP14.36□□□□□ -0.11
UPF3A-204ENST00000475218 SLC31A1O15431 190 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 TNFSF14O43557 240 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 ITGB7P26010 798 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 NR1I3Q14994 352 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 SUZ12Q15022 739 aaKnown RBP14.36□□□□□ -0.11
UPF3A-204ENST00000475218 PLEKHA7Q6IQ23 1121 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 NEK5Q6P3R8 708 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 SCYL2Q6P3W7 929 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 CCNI2Q6ZMN8 369 aaPredicted RBP14.36□□□□□ -0.11
UPF3A-204ENST00000475218 IQCHQ86VS3 1027 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 HORMAD1Q86X24 394 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 PLPP6Q8IY26 295 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 PEBP4Q96S96 227 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 HEPHQ9BQS7 1158 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 HAUS4Q9H6D7 363 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 AIPL1Q9NZN9 384 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 FARP1Q9Y4F1 1045 aaPredicted RBP14.36□□□□□ -0.11
UPF3A-204ENST00000475218 FADS3Q9Y5Q0 445 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 LAMA5O15230 3695 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 TRPM6Q9BX84 2022 aa14.36□□□□□ -0.11
UPF3A-204ENST00000475218 ANKRD11Q6UB99 2663 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-204ENST00000475218 A0A1W2PQC6 194 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 GOLGA8CPA6NN73 597 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 WASH4PA8MWX3 477 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 PRAMEF26H0Y7S4 382 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 KDELR3O43731 214 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 RAMP2O60895 175 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 ADRB3P13945 408 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 EPHB2P29323 1055 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 NUDT1P36639 197 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 PRKCIP41743 596 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 ABL2P42684 1182 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 DNA2P51530 1060 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 CA9Q16790 459 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 SETMARQ53H47 684 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-204ENST00000475218 ATXN7L2Q5T6C5 722 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-204ENST00000475218 GCNT7Q6ZNI0 430 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 VCPIP1Q96JH7 1222 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 GPATCH2LQ9NWQ4 482 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 HECAQ9UBI9 543 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-204ENST00000475218 GGT7Q9UJ14 662 aa14.35□□□□□ -0.11
UPF3A-204ENST00000475218 SMTNL1A8MU46 457 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 RAD51BO15315 384 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 TNFAIP3P21580 790 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 ETFBP38117 255 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 PBX1P40424 430 aa14.34□□□□□ -0.11
UPF3A-204ENST00000475218 NEK3P51956 506 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms