RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DPP6P42658 865 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 MAGEA8P43361 318 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 GRIA4P48058 902 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 NUP107P57740 925 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 NAA20P61599 178 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 MS4A2Q01362 244 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 FOXM1Q08050 763 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SFSWAPQ12872 951 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 USP4Q13107 963 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PRMT9Q6P2P2 845 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CASC4Q6P4E1 433 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 RSPH3Q86UC2 560 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 KCNMB4Q86W47 210 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TRIM50Q86XT4 487 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 AQP12AQ8IXF9 295 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 AFAP1L2Q8N4X5 818 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 C7orf31Q8N865 590 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SHCBP1Q8NEM2 672 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 BHLHE22Q8NFJ8 381 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TNIP2Q8NFZ5 429 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TSPAN14Q8NG11 270 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC16A10Q8TF71 515 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CCDC124Q96CT7 223 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF560Q96MR9 790 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TSNARE1Q96NA8 513 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PKP2Q99959 881 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 MRPL57Q9BQC6 102 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 MRPL45Q9BRJ2 306 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 RHOBTB2Q9BYZ6 727 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PRDM12Q9H4Q4 367 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 OCEL1Q9H607 264 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CD320Q9NPF0 282 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 FNIP2Q9P278 1114 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TMEM181Q9P2C4 612 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 ABCD2Q9UBJ2 740 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 DOCK4Q8N1I0 1966 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 A0A0J9YVX5 310 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 OR6B1O95007 311 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PGM3O95394 542 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PIGNO95427 931 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SPATA31D3P0C874 917 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 KCNE1P15382 129 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TFE3P19532 575 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SESN2P58004 480 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 NFKB2Q00653 900 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CDH17Q12864 832 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZBTB17Q13105 803 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ORC1Q13415 861 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ART3Q13508 389 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LAMC2Q13753 1193 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ARL13AQ5H913 290 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 NHSL2Q5HYW2 709 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SAMD4BQ5PRF9 694 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LRRC8EQ6NSJ5 796 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LINC00299Q6ZSB3 139 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SPATA31D4Q6ZUB0 917 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF354CQ86Y25 554 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CENPLQ8N0S6 344 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TOP6BLQ8N6T0 577 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 C12orf29Q8N999 325 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 BEST2Q8NFU1 509 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 FNDC8Q8TC99 324 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PNPT1Q8TCS8 783 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RSPH1Q8WYR4 309 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 WNT8BQ93098 351 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF669Q96BR6 464 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RCN3Q96D15 328 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC45A3Q96JT2 553 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TNIP3Q96KP6 325 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 KLHL32Q96NJ5 620 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 AGAP3Q96P47 875 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ASB2Q96Q27 587 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LGMNQ99538 433 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TUBA1CQ9BQE3 449 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MRPL1Q9BYD6 325 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MRPL46Q9H2W6 279 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 NCKIPSDQ9NZQ3 722 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TMEM9Q9P0T7 183 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 UBQLN1Q9UMX0 589 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MYRFQ9Y2G1 1151 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RNF11Q9Y3C5 154 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 AP4S1Q9Y587 144 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 COPG1Q9Y678 874 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LOC100653049A0A140TA62 436 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SH3PXD2BA1X283 911 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 FZD9O00144 591 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TXNDC9O14530 226 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 AIM2O14862 343 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 XPOTO43592 962 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 GRAP2O75791 330 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RNASEH2AO75792 299 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CNMDO75829 334 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 KRT34O76011 436 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 VAPBO95292 243 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 WISP3O95389 354 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LTFP02788 710 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 HSD17B1P14061 328 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MYF6P23409 242 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MPSTP25325 297 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RGS7P49802 495 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms