RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 SEPT6Q14141 434 aa21■□□□□ 0.95
USP39-203ENST00000409470 CMC1Q7Z7K0 106 aa21■□□□□ 0.95
USP39-203ENST00000409470 TEX26Q8N6G2 289 aa21■□□□□ 0.95
USP39-203ENST00000409470 PTCD2Q8WV60 388 aaKnown RBP21■□□□□ 0.95
USP39-203ENST00000409470 HERC2P3Q9BVR0 1158 aa21■□□□□ 0.95
USP39-203ENST00000409470 COL4A6Q14031 1691 aa21■□□□□ 0.95
USP39-203ENST00000409470 URODP06132 367 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 ABCG1P45844 678 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 VEPH1Q14D04 833 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 KLHDC10Q6PID8 442 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 DENND1CQ8IV53 801 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 RFWD2Q8NHY2 731 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 ZNF398Q8TD17 642 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 LRRC37BQ96QE4 947 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 VPS45Q9NRW7 570 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 MTO1Q9Y2Z2 717 aaKnown RBP20.99■□□□□ 0.95
USP39-203ENST00000409470 PRRG1O14668 218 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 DNAJC8O75937 253 aaPredicted RBP20.99■□□□□ 0.95
USP39-203ENST00000409470 LAG3P18627 525 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 NUMBP49757 651 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 LBRQ14739 615 aaKnown RBP20.99■□□□□ 0.95
USP39-203ENST00000409470 ESRP1Q6NXG1 681 aaKnown RBP20.99■□□□□ 0.95
USP39-203ENST00000409470 ZNF333Q96JL9 665 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 MRM3Q9HC36 420 aaKnown RBP20.99■□□□□ 0.95
USP39-203ENST00000409470 SPG21Q9NZD8 308 aa20.99■□□□□ 0.95
USP39-203ENST00000409470 ZFP37Q9Y6Q3 630 aaPredicted RBP20.99■□□□□ 0.95
USP39-203ENST00000409470 A0A0G2JND7 137 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 E2F8A0AVK6 867 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 VAPBO95292 243 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 IL1BP01584 269 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 CSF2RAP15509 400 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 PAMP19021 973 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 ELF1P32519 619 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 BST1Q10588 318 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 BNIP1Q12981 228 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 INSCQ1MX18 579 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 RABGAP1LQ5R372 815 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 PPP1R14CQ8TAE6 165 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 RAB3IL1Q8TBN0 382 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 ISL2Q96A47 359 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 PLD4Q96BZ4 506 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 MYRFLQ96LU7 910 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 ECT2Q9H8V3 914 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 EMCNQ9ULC0 261 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 CHKBQ9Y259 395 aa20.98■□□□□ 0.95
USP39-203ENST00000409470 TTC24A2A3L6 582 aaPredicted RBP20.97■□□□□ 0.95
USP39-203ENST00000409470 PLIN3O60664 434 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 PRAMEF11O60813 436 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 TGDSO95455 350 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 LRRC26Q2I0M4 334 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 C5orf22Q49AR2 442 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 FASTKD1Q53R41 847 aaKnown RBP20.97■□□□□ 0.95
USP39-203ENST00000409470 NLRP9Q7RTR0 991 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 AUTS2Q8WXX7 1259 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 ERP27Q96DN0 273 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 VPS39Q96JC1 886 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 MYLK2Q9H1R3 596 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 CAB39LQ9H9S4 337 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 GKN1Q9NS71 199 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 SLC2A6Q9UGQ3 507 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 MPOP05164 745 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 MMP2P08253 660 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 IRF1P10914 325 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 CORO1AP31146 461 aaKnown RBP20.97■□□□□ 0.95
USP39-203ENST00000409470 MAGEA12P43365 314 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 TWF1Q12792 350 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 RAB33AQ14088 237 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 ZNF235Q14590 738 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 TMCO4Q5TGY1 634 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 CCDC91Q7Z6B0 441 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 CMTR2Q8IYT2 770 aaKnown RBP20.97■□□□□ 0.95
USP39-203ENST00000409470 PGBD5Q8N414 524 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 PAWRQ96IZ0 340 aaKnown RBP20.97■□□□□ 0.95
USP39-203ENST00000409470 PRKD2Q9BZL6 878 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 C11orf49Q9H6J7 331 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 ARNT2Q9HBZ2 717 aa20.97■□□□□ 0.95
USP39-203ENST00000409470 TIMP1P01033 207 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 ITGB8P26012 769 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 SERPINH1P50454 418 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 CDH4P55283 916 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 WDR5P61964 334 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 TNK2Q07912 1038 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 THOC5Q13769 683 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 CNGA3Q16281 694 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 DBN1Q16643 649 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 DDX53Q86TM3 631 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 ANKLE1Q8NAG6 615 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 TRMT2BQ96GJ1 504 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 C7orf26Q96N11 449 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 POLR1EQ9GZS1 481 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 RC3H2Q9HBD1 1191 aaKnown RBP20.96■□□□□ 0.95
USP39-203ENST00000409470 TMEM216Q9P0N5 145 aa20.96■□□□□ 0.95
USP39-203ENST00000409470 A0A096LPK6 155 aa20.95■□□□□ 0.94
USP39-203ENST00000409470 A0A0D9SEW6 157 aa20.95■□□□□ 0.94
USP39-203ENST00000409470 HEATR9A2RTY3 570 aa20.95■□□□□ 0.94
USP39-203ENST00000409470 STC2O76061 302 aa20.95■□□□□ 0.94
USP39-203ENST00000409470 GMPRP36959 345 aa20.95■□□□□ 0.94
USP39-203ENST00000409470 ARFIP2P53365 341 aa20.95■□□□□ 0.94
USP39-203ENST00000409470 RPS24P62847 133 aaKnown RBP20.95■□□□□ 0.94
USP39-203ENST00000409470 GNA12Q03113 381 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms