RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CAPRIN1Q14444 709 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 GALNTL6Q49A17 601 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 SGO1Q5FBB7 561 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 POTEHQ6S545 545 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 CAND1Q86VP6 1230 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 PCSK9Q8NBP7 692 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 SPDYE1Q8NFV5 336 aaPredicted RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 MARCH2Q9P0N8 246 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 MFHAS1Q9Y4C4 1052 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 XIRP1Q702N8 1843 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 CBX4O00257 560 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 LTA4HP09960 611 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 CYP3A5P20815 502 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 ZNF618Q5T7W0 954 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 ZMAT2Q96NC0 199 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 CORO1CQ9ULV4 474 aaPredicted RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 MANSC4A6NHS7 340 aaPredicted RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 RGS4P49798 205 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 NEK3P51956 506 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 ZFP1Q6P2D0 407 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PKN3Q6P5Z2 889 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 ECSITQ9BQ95 431 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 TRIM54Q9BYV2 358 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PIGVQ9NUD9 493 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 SLX4Q8IY92 1834 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 RREB1Q92766 1687 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 TOP3BO95985 862 aaKnown RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 TSPAN8P19075 237 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 WARSP23381 471 aaKnown RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 PRKCHP24723 683 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 BHLHE22Q8NFJ8 381 aaPredicted RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 GATA5Q9BWX5 397 aaPredicted RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 EIF2B3Q9NR50 452 aaKnown RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 IGSF9Q9P2J2 1179 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 PSMD12O00232 456 aaPredicted RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 PRRG1O14668 218 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 PSMA4P25789 261 aaKnown RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 MSX2P35548 267 aaPredicted RBP18.77■□□□□ 0.6
USP48-204ENST00000400301 RAP1GAP2Q684P5 730 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 HPS6Q86YV9 775 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 RDH11Q8TC12 318 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 EBF2Q9HAK2 575 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 WASF2Q9Y6W5 498 aa18.77■□□□□ 0.6
USP48-204ENST00000400301 TFEBP19484 476 aa18.77■□□□□ 0.59
USP48-204ENST00000400301 ZBTB49Q6ZSB9 765 aa18.77■□□□□ 0.59
USP48-204ENST00000400301 SLC9A7Q96T83 725 aa18.77■□□□□ 0.59
USP48-204ENST00000400301 MRPL57Q9BQC6 102 aaKnown RBP18.77■□□□□ 0.59
USP48-204ENST00000400301 PNPLA8Q9NP80 782 aa18.77■□□□□ 0.59
USP48-204ENST00000400301 KCNH4Q9UQ05 1017 aa18.77■□□□□ 0.59
USP48-204ENST00000400301 SREBF2Q12772 1141 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 MSLNQ13421 630 aaPredicted RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 TMTC4Q5T4D3 741 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 CLEC20AQ6ZU45 233 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 TAC4Q86UU9 113 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 HIC2Q96JB3 615 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 KLHL5Q96PQ7 755 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 MT-CYBP00156 380 aaPredicted RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 RHOCP08134 193 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 PROZP22891 400 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 SCNN1AP37088 669 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 NFYCQ13952 458 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 LBRQ14739 615 aaKnown RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 AASDHQ4L235 1098 aaPredicted RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 ANGPTL8Q6UXH0 198 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 ANKRD23Q86SG2 305 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 ZNF781Q8N8C0 355 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 RP9Q8TA86 221 aaKnown RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 DIS3LQ8TF46 1054 aaKnown RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 NDUFA13Q9P0J0 144 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 PDE4DIPQ5VU43 2346 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 H0Y626 953 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 TK2O00142 265 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 BAIAP3O94812 1187 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 NMBRP28336 390 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 PEX6Q13608 980 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 ARL13AQ5H913 290 aaPredicted RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 RNF219Q5W0B1 726 aaPredicted RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 FAM117BQ6P1L5 589 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 AAGABQ6PD74 315 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 HFE2Q6ZVN8 426 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 CLEC4FQ8N1N0 589 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 NMD3Q96D46 503 aaKnown RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 CCDC90BQ9GZT6 254 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 SCUBE2Q9NQ36 999 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 hCG_2014768A0A024R1R8 64 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 ZBTB48P10074 688 aaPredicted RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 ALDH1A3P47895 512 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 GLUD2P49448 558 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 CLCN5P51795 746 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 BRMS1LQ5PSV4 323 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 CHADLQ6NUI6 762 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 CDHR3Q6ZTQ4 885 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 LGI2Q8N0V4 545 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 FBXO39Q8N4B4 442 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 LPCAT1Q8NF37 534 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 SLC25A23Q9BV35 468 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 POLR1EQ9GZS1 481 aaKnown RBP18.76■□□□□ 0.59
USP48-204ENST00000400301 FBXW11Q9UKB1 542 aa18.76■□□□□ 0.59
USP48-204ENST00000400301 TSPAN3O60637 253 aa18.75■□□□□ 0.59
USP48-204ENST00000400301 ALDH2P05091 517 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms