RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 VPS39Q96JC1 886 aa15.29■□□□□ 0.04
GPC3-202ENST00000394299 SP110Q9HB58 689 aa15.29■□□□□ 0.04
GPC3-202ENST00000394299 ARHGEF3Q9NR81 526 aa15.29■□□□□ 0.04
GPC3-202ENST00000394299 PLXNA3P51805 1871 aa15.29■□□□□ 0.04
GPC3-202ENST00000394299 A0A0D9SEW6 157 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 PHGDHO43175 533 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 CXCL10P02778 98 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 MMP2P08253 660 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 NDST2P52849 883 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 ELAVL2Q12926 359 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 ARHGEF6Q15052 776 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 POLD3Q15054 466 aaPredicted RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 CTC1Q2NKJ3 1217 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 ATG16L1Q676U5 607 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 KDELC1Q6UW63 502 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 PARP9Q8IXQ6 854 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 LGI2Q8N0V4 545 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 LRRC43Q8N309 656 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 PPP1R14CQ8TAE6 165 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 AUTS2Q8WXX7 1259 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 UTP4Q969X6 686 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 SLC7A6OSQ96CW6 309 aaPredicted RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 ZNF512Q96ME7 567 aaPredicted RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 CLSTN3Q9BQT9 956 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 TMEM175Q9BSA9 504 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 MCMBPQ9BTE3 642 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 MRPL9Q9BYD2 267 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 ARMCX1Q9P291 453 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 PPARGC1AQ9UBK2 798 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 OGDHLQ9ULD0 1010 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 DRGXA6NNA5 263 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 AURKAO14965 403 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 MUSKO15146 869 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 PSMD3O43242 534 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 SNNO75324 88 aaPredicted RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 TGDSO95455 350 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 ARCN1P48444 511 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 HNRNPDQ14103 355 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 MFSD6LQ8IWD5 586 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 SPATA6LQ8N4H0 392 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 WBP2Q969T9 261 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 ARL8BQ9NVJ2 186 aa15.28■□□□□ 0.04
GPC3-202ENST00000394299 CPSF2Q9P2I0 782 aaKnown RBP15.28■□□□□ 0.04
GPC3-202ENST00000394299 DOCK4Q8N1I0 1966 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 BIRC5O15392 142 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 HOXA2O43364 376 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 TACR2P21452 398 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 MAGEA12P43365 314 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 PSEN1P49768 467 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 RENBPP51606 427 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 AQP5P55064 265 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 PRMT2P55345 433 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 ZBTB16Q05516 673 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 USP41Q3LFD5 358 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 SPOUT1Q5T280 376 aaKnown RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 KIAA1841Q6NSI8 718 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 ZC3HC1Q86WB0 502 aaKnown RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 IMP4Q96G21 291 aaKnown RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 IGSF21Q96ID5 467 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 C7orf26Q96N11 449 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 EBF4Q9BQW3 602 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 OXCT2Q9BYC2 517 aaPredicted RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 UBE2OQ9C0C9 1292 aaKnown RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 SLC25A51Q9H1U9 297 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 CD248Q9HCU0 757 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 ENTPD7Q9NQZ7 604 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 OLA1Q9NTK5 396 aaKnown RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 TCAF1Q9Y4C2 921 aa15.27■□□□□ 0.04
GPC3-202ENST00000394299 FNDC1Q4ZHG4 1894 aaPredicted RBP15.27■□□□□ 0.04
GPC3-202ENST00000394299 GREB1Q4ZG55 1949 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 MGRN1O60291 552 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 RAMP2O60895 175 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 SERPINB8P50452 374 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 RPS24P62847 133 aaKnown RBP15.27■□□□□ 0.03
GPC3-202ENST00000394299 ITGA9Q13797 1035 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 ANO4Q32M45 955 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 ZNF789Q5FWF6 425 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 SLC8B1Q6J4K2 584 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 DENND1CQ8IV53 801 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 SLC41A1Q8IVJ1 513 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 ZNF398Q8TD17 642 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 NACA2Q9H009 215 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 COPG2Q9UBF2 871 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 MTRRQ9UBK8 725 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 BAIAP2L1Q9UHR4 511 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 KCTD3Q9Y597 815 aa15.27■□□□□ 0.03
GPC3-202ENST00000394299 BUD23O43709 281 aaKnown RBP15.26■□□□□ 0.03
GPC3-202ENST00000394299 EFEMP2O95967 443 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 KLKB1P03952 638 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 GLDCP23378 1020 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 SLC1A6P48664 564 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 SGSHP51688 502 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 PDPK2PQ6A1A2 396 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 RAPH1Q70E73 1250 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 TRIM42Q8IWZ5 723 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 PPHLN1Q8NEY8 458 aaKnown RBP15.26■□□□□ 0.03
GPC3-202ENST00000394299 OR7D4Q8NG98 312 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 SKA1Q96BD8 255 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 NMUR2Q9GZQ4 415 aa15.26■□□□□ 0.03
GPC3-202ENST00000394299 RNF38Q9H0F5 515 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms