RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TRIM39Q9HCM9 518 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 CLDN5O00501 218 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 PSEN2P49810 448 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 PPP4CP60510 307 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 IRF8Q02556 426 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 PGBD2Q6P3X8 592 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 RPTNQ6XPR3 784 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 ARHGAP36Q6ZRI8 547 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 CDCA5Q96FF9 252 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 POLR1EQ9GZS1 481 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 MCUBQ9NWR8 336 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 OR12D3Q9UGF7 316 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 ANAPC2Q9UJX6 822 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 ZNF24P17028 368 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 FSCN1Q16658 493 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 IL17RBQ9NRM6 502 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 KANSL3Q9P2N6 904 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 RABGEF1Q9UJ41 708 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 A2ML1A8K2U0 1454 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 ZCCHC11Q5TAX3 1644 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 CDC42BPBQ9Y5S2 1711 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 RPL14P50914 215 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 USP46P62068 366 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 FRG1Q14331 258 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 GNA13Q14344 377 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 HYIQ5T013 277 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 ATG14Q6ZNE5 492 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 KLHL23Q8NBE8 558 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 CAVIN3Q969G5 261 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 PANX3Q96QZ0 392 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 INO80Q9ULG1 1556 aaPredicted RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 DEF8Q6ZN54 512 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 C8orf59Q8N0T1 100 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 C9orf16Q9BUW7 83 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ACAT2Q9BWD1 397 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 MRPL17Q9NRX2 175 aaKnown RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 PTGFRNQ9P2B2 879 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ATP6AP2A0A1C7CYW4 349 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ERAL1O75616 437 aaKnown RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ATP6AP2O75787 350 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 IL1BP01584 269 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 JAK1P23458 1154 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 IFNGR2P38484 337 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ZNF268Q14587 947 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 BCORL1Q5H9F3 1711 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 TNS4Q8IZW8 715 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 SETD9Q8NE22 299 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 SENP8Q96LD8 212 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 FRMD6Q96NE9 622 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 FERD3LQ96RJ6 166 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 TULP4Q9NRJ4 1543 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 RBM7Q9Y580 266 aaKnown RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 PCDHGA3Q9Y5H0 932 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 CROCC2H7BZ55 1655 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 EME2A4GXA9 379 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 PGM3O95394 542 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 GJB1P08034 283 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 CLUP10909 449 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 MSX2P35548 267 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 NRG1Q02297 640 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 UNC5AQ6ZN44 842 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 FEM1CQ96JP0 617 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 TRPM1Q7Z4N2 1603 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 E7ENQ6 273 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 RPN2P04844 631 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 SERPINA4P29622 427 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 AMPD2Q01433 879 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 XKR6Q5GH73 641 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 SPESP1Q6UW49 350 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 FAM220AQ7Z4H9 259 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 CDYL2Q8N8U2 506 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 KCTD4Q8WVF5 259 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 GMCL1Q96IK5 515 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 AASDHPPTQ9NRN7 309 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 NDUFA13Q9P0J0 144 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 IKZF3Q9UKT9 509 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ABCA8O94911 1581 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 JCADQ9P266 1359 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 H2AFXP16104 143 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 CXCL9Q07325 125 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 RFX4Q33E94 735 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 FAAH2Q6GMR7 532 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 PMF1Q6P1K2 205 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 CRTC3Q6UUV7 619 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 OTOP1Q7RTM1 612 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 APTXQ7Z2E3 356 aaKnown RBP13.85□□□□□ -0.19
COL4A1-201ENST00000375820 NEK7Q8TDX7 302 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 MBOAT7Q96N66 472 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 BTBD7Q9P203 1132 aa13.85□□□□□ -0.19
COL4A1-201ENST00000375820 ABHD14A-ACY1A0A1B0GW23 586 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ANXA6P08133 673 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PRLRP16471 622 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 DGKAP23743 735 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 KDELR1P24390 212 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 PTPN5P54829 565 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ADARP55265 1226 aaKnown RBP13.84□□□□□ -0.19
COL4A1-201ENST00000375820 SPIBQ01892 262 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ACVR2BQ13705 512 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 OLFML2AQ68BL7 652 aa13.84□□□□□ -0.19
COL4A1-201ENST00000375820 ZFPM1Q8IX07 1006 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms