RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 LCA5LO95447 670 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CDH3P22223 829 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ARF5P84085 180 aa8.79□□□□□ -1
RTN3-202ENST00000339997 KYAT3Q6YP21 454 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 GATAD2AQ86YP4 633 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ESAMQ96AP7 390 aa8.79□□□□□ -1
RTN3-202ENST00000339997 QKIQ96PU8 341 aaKnown RBP eCLIP8.79□□□□□ -11e-6■■■□□ 15.5
RTN3-202ENST00000339997 CPNE1Q99829 537 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CADM1Q9BY67 442 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 RAD21L1Q9H4I0 556 aa8.79□□□□□ -1
RTN3-202ENST00000339997 SERHL2Q9H4I8 314 aa8.79□□□□□ -1
RTN3-202ENST00000339997 TUT1Q9H6E5 874 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 LIN28AQ9H9Z2 209 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 ZFYVE28Q9HCC9 887 aa8.79□□□□□ -1
RTN3-202ENST00000339997 SERHLQ9NQF3 203 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CIDEBQ9UHD4 219 aa8.79□□□□□ -1
RTN3-202ENST00000339997 RABGEF1Q9UJ41 708 aa8.79□□□□□ -1
RTN3-202ENST00000339997 JCADQ9P266 1359 aa8.79□□□□□ -1
RTN3-202ENST00000339997 FAM237AA0A1B0GTK4 181 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CCDC189A1A4V9 331 aa8.79□□□□□ -1
RTN3-202ENST00000339997 CES2O00748 559 aa8.79□□□□□ -1
RTN3-202ENST00000339997 MEIS2O14770 477 aa8.79□□□□□ -1
RTN3-202ENST00000339997 HDAC3O15379 428 aa8.79□□□□□ -1
RTN3-202ENST00000339997 B4GALT5O43286 388 aa8.79□□□□□ -1
RTN3-202ENST00000339997 RGS20O76081 388 aa8.79□□□□□ -1
RTN3-202ENST00000339997 SNRPB2P08579 225 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 NOS3P29474 1203 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ARL4DP49703 201 aa8.79□□□□□ -1
RTN3-202ENST00000339997 AQP4P55087 323 aa8.79□□□□□ -1
RTN3-202ENST00000339997 OXCT1P55809 520 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ZNF268Q14587 947 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 CPSF6Q16630 551 aaKnown RBP eCLIP8.79□□□□□ -1
RTN3-202ENST00000339997 TTLL9Q3SXZ7 439 aa8.79□□□□□ -1
RTN3-202ENST00000339997 FAM183BPQ6ZVS7 135 aa8.79□□□□□ -1
RTN3-202ENST00000339997 EFL1Q7Z2Z2 1120 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 KIAA0319LQ8IZA0 1049 aa8.79□□□□□ -1
RTN3-202ENST00000339997 PNPT1Q8TCS8 783 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 ZNF483Q8TF39 744 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 LRRC39Q96DD0 335 aa8.79□□□□□ -1
RTN3-202ENST00000339997 LENG8Q96PV6 779 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 SCUBE2Q9NQ36 999 aa8.79□□□□□ -1
RTN3-202ENST00000339997 PDGFCQ9NRA1 345 aa8.79□□□□□ -1
RTN3-202ENST00000339997 NKX1-2Q9UD57 310 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 OR12D3Q9UGF7 316 aa8.79□□□□□ -1
RTN3-202ENST00000339997 TELO2Q9Y4R8 837 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ARIH1Q9Y4X5 557 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 CLDN5O00501 218 aa8.79□□□□□ -1
RTN3-202ENST00000339997 TEX28O15482 410 aa8.79□□□□□ -1
RTN3-202ENST00000339997 PLOD3O60568 738 aa8.79□□□□□ -1
RTN3-202ENST00000339997 SERPINF2P08697 491 aa8.79□□□□□ -1
RTN3-202ENST00000339997 FCGR1AP12314 374 aa8.79□□□□□ -1
RTN3-202ENST00000339997 FOXN2P32314 431 aa8.79□□□□□ -1
RTN3-202ENST00000339997 SNRPFP62306 86 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 C1DQ13901 141 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 ACSBG2Q5FVE4 666 aa8.79□□□□□ -1
RTN3-202ENST00000339997 MACC1Q6ZN28 852 aa8.79□□□□□ -1
RTN3-202ENST00000339997 DET1Q7L5Y6 550 aa8.79□□□□□ -1
RTN3-202ENST00000339997 APOBEC3FQ8IUX4 373 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 CENPIQ92674 756 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 DGCR14Q96DF8 476 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 ZHX1-C8orf76Q96EF9 292 aa8.79□□□□□ -1
RTN3-202ENST00000339997 ANKRD27Q96NW4 1050 aa8.79□□□□□ -1
RTN3-202ENST00000339997 TM6SF2Q9BZW4 377 aa8.79□□□□□ -1
RTN3-202ENST00000339997 AVENQ9NQS1 362 aaPredicted RBP8.79□□□□□ -1
RTN3-202ENST00000339997 TAS2R1Q9NYW7 299 aa8.79□□□□□ -1
RTN3-202ENST00000339997 LSM7Q9UK45 103 aaKnown RBP8.79□□□□□ -1
RTN3-202ENST00000339997 FSCN2O14926 492 aa8.78□□□□□ -1
RTN3-202ENST00000339997 PEX10O60683 326 aa8.78□□□□□ -1
RTN3-202ENST00000339997 MPOP05164 745 aa8.78□□□□□ -1
RTN3-202ENST00000339997 SPATA31C1P0DKV0 1188 aa8.78□□□□□ -1
RTN3-202ENST00000339997 UQCRBP14927 111 aa8.78□□□□□ -1
RTN3-202ENST00000339997 NEK3P51956 506 aa8.78□□□□□ -1
RTN3-202ENST00000339997 RTP1P59025 263 aa8.78□□□□□ -1
RTN3-202ENST00000339997 CYP4F8P98187 520 aa8.78□□□□□ -1
RTN3-202ENST00000339997 SHC3Q92529 594 aa8.78□□□□□ -1
RTN3-202ENST00000339997 SYT15Q9BQS2 421 aa8.78□□□□□ -1
RTN3-202ENST00000339997 EBF4Q9BQW3 602 aa8.78□□□□□ -1
RTN3-202ENST00000339997 AMBNQ9NP70 447 aa8.78□□□□□ -1
RTN3-202ENST00000339997 SNX15Q9NRS6 342 aa8.78□□□□□ -1
RTN3-202ENST00000339997 NKIRAS2Q9NYR9 191 aa8.78□□□□□ -1
RTN3-202ENST00000339997 TAS2R13Q9NYV9 303 aa8.78□□□□□ -1
RTN3-202ENST00000339997 SLC17A6Q9P2U8 582 aa8.78□□□□□ -1
RTN3-202ENST00000339997 TIMM22Q9Y584 194 aa8.78□□□□□ -1
RTN3-202ENST00000339997 CCNA2P20248 432 aa8.78□□□□□ -1
RTN3-202ENST00000339997 JAK1P23458 1154 aa8.78□□□□□ -1
RTN3-202ENST00000339997 ICAM3P32942 547 aa8.78□□□□□ -1
RTN3-202ENST00000339997 CD86P42081 329 aa8.78□□□□□ -1
RTN3-202ENST00000339997 SLC6A3Q01959 620 aa8.78□□□□□ -1
RTN3-202ENST00000339997 GBE1Q04446 702 aa8.78□□□□□ -1
RTN3-202ENST00000339997 TRIM32Q13049 653 aa8.78□□□□□ -1
RTN3-202ENST00000339997 BLMHQ13867 455 aa8.78□□□□□ -1
RTN3-202ENST00000339997 ZNF284Q2VY69 593 aa8.78□□□□□ -1
RTN3-202ENST00000339997 MOXD1Q6UVY6 613 aa8.78□□□□□ -1
RTN3-202ENST00000339997 KRT78Q8N1N4 520 aa8.78□□□□□ -1
RTN3-202ENST00000339997 GPR152Q8TDT2 470 aa8.78□□□□□ -1
RTN3-202ENST00000339997 EPS8L2Q9H6S3 715 aa8.78□□□□□ -1
RTN3-202ENST00000339997 MARCH7Q9H992 704 aa8.78□□□□□ -1
RTN3-202ENST00000339997 EURLQ9NYK6 297 aa8.78□□□□□ -1
RTN3-202ENST00000339997 TPRKBQ9Y3C4 175 aa8.78□□□□□ -1
RTN3-202ENST00000339997 UBR1Q8IWV7 1749 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms