RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PSMD11O00231 422 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 ATP6AP2O75787 350 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 ENDOD1O94919 500 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 BCL10O95999 233 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 SBK3P0C264 359 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 CCNA2P20248 432 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 OXTRP30559 389 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 SLC7A2P52569 658 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 TGFB2P61812 414 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 PRKCEQ02156 737 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 CLCQ05315 142 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 FAM35AQ86V20 835 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 LSMEM2Q8N112 164 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 ACE2Q9BYF1 805 aaPredicted RBP13.66□□□□□ -0.22
SKA3-201ENST00000298260 TNFRSF12AQ9NP84 129 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 ASNSD1Q9NWL6 643 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 CROTQ9UKG9 612 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 CLRN2A0PK11 232 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 NEMP2A6NFY4 417 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 XYLBO75191 536 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 STBD1O95210 358 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 TKTP29401 623 aaKnown RBP13.66□□□□□ -0.22
SKA3-201ENST00000298260 NR4A2P43354 598 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 GSSP48637 474 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 RAD23AP54725 363 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 NSUN2Q08J23 767 aaKnown RBP eCLIP13.66□□□□□ -0.22
SKA3-201ENST00000298260 TIGD2Q4W5G0 525 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 PPP4R4Q6NUP7 873 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 FAM117BQ6P1L5 589 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 RNF19BQ6ZMZ0 732 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 PYROXD2Q8N2H3 581 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 CLIP4Q8N3C7 705 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 SYTL5Q8TDW5 730 aaPredicted RBP13.66□□□□□ -0.22
SKA3-201ENST00000298260 CLEC4DQ8WXI8 215 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 ZNF518BQ9C0D4 1074 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 IPO11Q9UI26 975 aaKnown RBP13.66□□□□□ -0.22
SKA3-201ENST00000298260 GNPTGQ9UJJ9 305 aa13.66□□□□□ -0.22
SKA3-201ENST00000298260 DOCK5Q9H7D0 1870 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 HEATR9A2RTY3 570 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 EI24O14681 340 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 ALDH1A2O94788 518 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 MYO1DO94832 1006 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 SNAP29O95721 258 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 GPD1P21695 349 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 CYP2F1P24903 491 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 SLC7A1P30825 629 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 CDH5P33151 784 aaPredicted RBP13.65□□□□□ -0.22
SKA3-201ENST00000298260 HPCAL1P37235 193 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 PCYT1AP49585 367 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 CNTN2Q02246 1040 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 PDK2Q15119 407 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 PGM5Q15124 567 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 TBCELQ5QJ74 424 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 FAM183BPQ6ZVS7 135 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 SLC4A11Q8NBS3 891 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 SNX19Q92543 992 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 ZNF669Q96BR6 464 aaPredicted RBP13.65□□□□□ -0.22
SKA3-201ENST00000298260 MFSD3Q96ES6 412 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 IL12RB2Q99665 862 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 ATAD3AQ9NVI7 634 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 CACNA2D2Q9NY47 1150 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 DNMT3BQ9UBC3 853 aaKnown RBP13.65□□□□□ -0.22
SKA3-201ENST00000298260 RAP2CQ9Y3L5 183 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 LOXHD1Q8IVV2 1947 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 BCLAF3A2AJT9 711 aaKnown RBP13.65□□□□□ -0.22
SKA3-201ENST00000298260 MICAL2O94851 1124 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 CNTFP26441 200 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 HSD17B4P51659 736 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 ZNF143P52747 638 aaPredicted RBP13.65□□□□□ -0.22
SKA3-201ENST00000298260 SPCS2Q15005 226 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 INAVAQ3KP66 663 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 REP15Q6BDI9 236 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 COLGALT1Q8NBJ5 622 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 MAGEE2Q8TD90 523 aaPredicted RBP13.65□□□□□ -0.22
SKA3-201ENST00000298260 RTP4Q96DX8 246 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 GLT1D1Q96MS3 346 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 RMDN3Q96TC7 470 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 DOK1Q99704 481 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 ZNF341Q9BYN7 854 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 TMPRSS4Q9NRS4 437 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 OXSMQ9NWU1 459 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 PCDHA10Q9Y5I2 948 aa13.65□□□□□ -0.22
SKA3-201ENST00000298260 FAM155AB1AL88 458 aaPredicted RBP13.64□□□□□ -0.23
SKA3-201ENST00000298260 TSPAN8P19075 237 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 PSMB4P28070 264 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 ALDH4A1P30038 563 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 GP5P40197 560 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 PRPSAP1Q14558 356 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 CCDC153Q494R4 210 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 CCDC14Q49A88 953 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 PNPLA1Q8N8W4 532 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 OR52K1Q8NGK4 314 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 URGCPQ8TCY9 931 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TRPC4APQ8TEL6 797 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 FNIP1Q8TF40 1166 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 KCTD4Q8WVF5 259 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TRUB1Q8WWH5 349 aaKnown RBP13.64□□□□□ -0.23
SKA3-201ENST00000298260 CERS2Q96G23 380 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 ZDHHC15Q96MV8 337 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TCF12Q99081 682 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms