RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 C9orf172C9J069 976 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 LMO7DNF2Z398 122 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 YY2O15391 372 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 MTSS1O43312 755 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 EIF5BO60841 1220 aaKnown RBP14.89□□□□□ -0.03
CLN3-249ENST00000636685 LTFP02788 710 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 ANXA6P08133 673 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 CHRNA3P32297 505 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 NOS2P35228 1153 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 VASPP50552 380 aaPredicted RBP14.89□□□□□ -0.03
CLN3-249ENST00000636685 PLK1P53350 603 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 NUCB2P80303 420 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 ESRP1Q6NXG1 681 aaKnown RBP14.89□□□□□ -0.03
CLN3-249ENST00000636685 CCAR2Q8N163 923 aaKnown RBP14.89□□□□□ -0.03
CLN3-249ENST00000636685 CCDC150Q8NCX0 1101 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 DQX1Q8TE96 717 aaKnown RBP14.89□□□□□ -0.03
CLN3-249ENST00000636685 SEMA4DQ92854 862 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 TMEM74Q96NL1 305 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 LRRC61Q9BV99 259 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 CLPBQ9H078 707 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 CUEDC2Q9H467 287 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 DYRK4Q9NR20 520 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 TMPRSS4Q9NRS4 437 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 APOBEC3BQ9UH17 382 aaKnown RBP14.89□□□□□ -0.03
CLN3-249ENST00000636685 TLR6Q9Y2C9 796 aa14.89□□□□□ -0.03
CLN3-249ENST00000636685 A0A1W2PQ27 194 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 A0A1W2PQ64 194 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 A0A1W2PQC6 194 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 AGFG2O95081 481 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 FYNP06241 537 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 CELA2BP08218 269 aaPredicted RBP14.88□□□□□ -0.03
CLN3-249ENST00000636685 CD97P48960 835 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 CCDC15Q0P6D6 951 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 SLC39A14Q15043 492 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 CRYBG3Q68DQ2 2970 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 CXorf57Q6NSI4 855 aaKnown RBP14.88□□□□□ -0.03
CLN3-249ENST00000636685 ERN2Q76MJ5 926 aaKnown RBP14.88□□□□□ -0.03
CLN3-249ENST00000636685 ATCAYQ86WG3 371 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 PHACTR4Q8IZ21 702 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 TTC39CQ8N584 583 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 SH2D3CQ8N5H7 860 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 KYQ8NBH2 561 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 C9orf43Q8TAL5 461 aaPredicted RBP14.88□□□□□ -0.03
CLN3-249ENST00000636685 SPATA20Q8TB22 786 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 TMEM174Q8WUU8 243 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 BTN2A2Q8WVV5 523 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 IRGQQ8WZA9 623 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 ALG14Q96F25 216 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 KCTD10Q9H3F6 313 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 SIRPGQ9P1W8 387 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 FRMD4BQ9Y2L6 1034 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 CSMD1Q96PZ7 3565 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 POLQO75417 2590 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 CELSR2Q9HCU4 2923 aa14.88□□□□□ -0.03
CLN3-249ENST00000636685 FPGTO14772 594 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 CD2BP2O95400 341 aaKnown RBP14.87□□□□□ -0.03
CLN3-249ENST00000636685 CD19P15391 556 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 TSHRP16473 764 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 POU3F2P20265 443 aaPredicted RBP14.87□□□□□ -0.03
CLN3-249ENST00000636685 RIPPLY3P57055 190 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 RPS21P63220 83 aaKnown RBP14.87□□□□□ -0.03
CLN3-249ENST00000636685 CHST14Q8NCH0 376 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 TMIEQ8NEW7 156 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 OR52K2Q8NGK3 314 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 RNF34Q969K3 372 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 SERPINB11Q96P15 392 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 USP28Q96RU2 1077 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 KLF6Q99612 283 aaPredicted RBP14.87□□□□□ -0.03
CLN3-249ENST00000636685 LRRN3Q9H3W5 708 aa14.87□□□□□ -0.03
CLN3-249ENST00000636685 F5H5T6 163 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 MT-CO1P00395 513 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 SETSIPP0DME0 302 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 UQCRFS1P47985 274 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 STK4Q13043 487 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 CUL4BQ13620 913 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 ZC3H12AQ5D1E8 599 aaKnown RBP14.86□□□□□ -0.03
CLN3-249ENST00000636685 ARSIQ5FYB1 569 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 ZNF787Q6DD87 383 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 PMF1Q6P1K2 205 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 TAC4Q86UU9 113 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 ARL10Q8N8L6 244 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 IQUBQ8NA54 791 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 KIAA0895Q8NCT3 520 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 OR2A12Q8NGT7 310 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 GRIN3AQ8TCU5 1115 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 EEF2KMTQ96G04 330 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 FEM1AQ9BSK4 669 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 HDAC8Q9BY41 377 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 NAALADL1Q9UQQ1 740 aa14.86□□□□□ -0.03
CLN3-249ENST00000636685 FARP1Q9Y4F1 1045 aaPredicted RBP14.86□□□□□ -0.03
CLN3-249ENST00000636685 MORC2Q9Y6X9 1032 aaPredicted RBP14.86□□□□□ -0.03
CLN3-249ENST00000636685 PVALEFA0A1B0GWK0 134 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 A1L4Q6 167 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 K7ERQ8 282 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 O00370 1275 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 APOEP02649 317 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 KRT7P08729 469 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 RNF224P0DH78 156 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 SRCP12931 536 aa14.85□□□□□ -0.03
CLN3-249ENST00000636685 CD82P27701 267 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms