RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 C2CD5Q86YS7 1000 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 KLBQ86Z14 1044 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 CPXCR1Q8N123 301 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 SLC44A5Q8NCS7 719 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 SDCCAG3Q96C92 435 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 NPAS1Q99742 590 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 TRMOQ9BU70 441 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 C1QTNF7Q9BXJ2 289 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 HDHD5Q9BXW7 423 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 ITM2CQ9NQX7 267 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 LAMP3Q9UQV4 416 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 RABGAP1Q9Y3P9 1069 aa5.35□□□□□ -1.55
SMAD4-216ENST00000593223 GLI3P10071 1580 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 ARHGAP5Q13017 1502 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 SOCS2O14508 198 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 SYN3O14994 580 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 CNOT3O75175 753 aaKnown RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 MOSPD3O75425 235 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 TMEM191BP0C7N4 346 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 PKMP14618 531 aaKnown RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 CHN1P15882 459 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 HOXB9P17482 250 aaPredicted RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 LMO1P25800 156 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 CHRNA5P30532 468 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 ME1P48163 572 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 RUNDC3AQ59EK9 446 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 KIAA1755Q5JYT7 1200 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 C11orf87Q6NUJ2 197 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 SLC30A9Q6PML9 568 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 LDHAL6AQ6ZMR3 332 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 TMEM57Q8N5G2 664 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 WIPF2Q8TF74 440 aaPredicted RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 RILPL2Q969X0 211 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 ERP27Q96DN0 273 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 RBM17Q96I25 401 aaKnown RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 ZFYVE19Q96K21 471 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 TMEM79Q9BSE2 394 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 ISCA1Q9BUE6 129 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 FOXP1Q9H334 677 aaPredicted RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 RETREG1Q9H6L5 497 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 RMI1Q9H9A7 625 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 TXNRD2Q9NNW7 524 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 CWC25Q9NXE8 425 aaPredicted RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 HEY2Q9UBP5 337 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 FEM1BQ9UK73 627 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 AGO2Q9UKV8 859 aaKnown RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 COG5Q9UP83 839 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 DTX4Q9Y2E6 619 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 PKP3Q9Y446 797 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 AFG3L2Q9Y4W6 797 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.34□□□□□ -1.55
SMAD4-216ENST00000593223 PCDHGB3Q9Y5G1 929 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 HS3ST3B1Q9Y662 390 aa5.34□□□□□ -1.55
SMAD4-216ENST00000593223 MYO5CQ9NQX4 1742 aa5.34□□□□□ -1.56
SMAD4-216ENST00000593223 PCNTO95613 3336 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 TRBV5-3A0A0A0MS03 114 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 KIR2DS5A0A0G2JLQ3 304 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 B9A039 149 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 KIR2DS3K7RE56 304 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 CCNT1O60563 726 aaKnown RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 ZC3H11AO75152 810 aaKnown RBP eCLIP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 TK1P04183 234 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 FAM200BP0CF97 657 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 LYL1P12980 280 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 DDIT3P35638 169 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 PPM1FP49593 454 aaPredicted RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 PAPOLAP51003 745 aaKnown RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 GAD2Q05329 585 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 PMPCAQ10713 525 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 SMTNL2Q2TAL5 461 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 GXYLT1Q4G148 440 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 C6orf10Q5SRN2 563 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 HYIQ5T013 277 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 RASGRP2Q7LDG7 609 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 C1QL2Q7Z5L3 287 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 ZSCAN30Q86W11 494 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 SUGP1Q8IWZ8 645 aaKnown RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 DDIASQ8IXT1 998 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 ARFGAP1Q8N6T3 406 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 EXD3Q8N9H8 876 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 PPHLN1Q8NEY8 458 aaKnown RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 CEP70Q8NHQ1 597 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 FAM110DQ8TAY7 271 aaPredicted RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 SPPL3Q8TCT6 385 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 IGFBPL1Q8WX77 278 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 CENPIQ92674 756 aaPredicted RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 KAT2AQ92830 837 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 HMCESQ96FZ2 354 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 ZNF419Q96HQ0 510 aaPredicted RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 ARHGAP39Q9C0H5 1083 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 THSD1Q9NS62 852 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 MSRB1Q9NZV6 116 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 KLQ9UEF7 1012 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 DERAQ9Y315 318 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 RRP7AQ9Y3A4 280 aaKnown RBP5.33□□□□□ -1.56
SMAD4-216ENST00000593223 CTTNBP2Q8WZ74 1663 aa5.33□□□□□ -1.56
SMAD4-216ENST00000593223 SPAG9O60271 1321 aaKnown RBP5.32□□□□□ -1.56
SMAD4-216ENST00000593223 TCRBV7S3A2A0A539 114 aa5.32□□□□□ -1.56
SMAD4-216ENST00000593223 NPIPB13A6NJU9 1138 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms