RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 WDR46O15213 610 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 HNRNPA1P09651 372 aaKnown RBP eCLIP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 ATP1A3P13637 1013 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 MUTP22033 750 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 SERPINA4P29622 427 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 CPT1AP50416 773 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 RPS7P62081 194 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 VAMP2P63027 116 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 CUL4AQ13619 759 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 HLFQ16534 295 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 BTBD16Q32M84 506 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 MRNIPQ6NTE8 343 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 C11orf88Q6PI97 169 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 USP17L6PQ6QN14 398 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 Q6ZNX1 250 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 Q6ZRM9 215 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 ARMC8Q8IUR7 673 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 SCYL3Q8IZE3 742 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 RNF152Q8N8N0 203 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 FSIP1Q8NA03 581 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 GMCL1P1Q8NEA9 526 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 BICD2Q8TD16 824 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 U2AF1L4Q8WU68 220 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 NMD3Q96D46 503 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 FBXL20Q96IG2 436 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 HAPLN3Q96S86 360 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 TSPAN18Q96SJ8 248 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 MRI1Q9BV20 369 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 TM6SF1Q9BZW5 370 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 DEFB129Q9H1M3 183 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 MRPL46Q9H2W6 279 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 GSTO2Q9H4Y5 243 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 CCDC134Q9H6E4 229 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 TRIM36Q9NQ86 728 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 FBXO28Q9NVF7 368 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 SIDT1Q9NXL6 827 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 RGL1Q9NZL6 768 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 NDUFAF4Q9P032 175 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 MYO1AQ9UBC5 1043 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 CHORDC1Q9UHD1 332 aaPredicted RBP2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 GPR52Q9Y2T5 361 aa2.05□□□□□ -2.08
SMCHD1-211ENST00000584897 A0A1W2PPH5 198 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 A0A1W2PRQ8 180 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CCDC78A2IDD5 438 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 A8MV72 311 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 F2RL2O00254 374 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 RNF113AO15541 343 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ADCY6O43306 1168 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DNPH1O43598 174 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ITGA10O75578 1167 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SURF6O75683 361 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 AGFG2O95081 481 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 FAM163BP0C2L3 166 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ITGAMP11215 1152 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TNNT1P13805 278 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CHRM3P20309 590 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PSMA4P25789 261 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PDIA3P30101 505 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 FOLR3P41439 243 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PTDSS1P48651 473 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 GMPSP49915 693 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NKX6-1P78426 367 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 HTRA4P83105 476 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MPP1Q00013 466 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DSC2Q02487 901 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TLE1Q04724 770 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NSUN2Q08J23 767 aaKnown RBP eCLIP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 AIMP1Q12904 312 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 IQCB1Q15051 598 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PTPRRQ15256 657 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ZSCAN23Q3MJ62 389 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ASPRV1Q53RT3 343 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SLC45A4Q5BKX6 768 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 BMP2KLQ5H9B9 411 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TSHZ3Q63HK5 1081 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 AFMIDQ63HM1 303 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ATG16L1Q676U5 607 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 CLEC9AQ6UXN8 241 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ABHD15Q6UXT9 468 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 R3HCC1LQ7Z5L2 792 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 WDR53Q7Z5U6 358 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TBC1D1Q86TI0 1168 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MOGAT3Q86VF5 341 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PRSS3P2Q8NHM4 247 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ABHD5Q8WTS1 349 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 ST8SIA4Q92187 359 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PPP2R3CQ969Q6 453 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NAF1Q96HR8 494 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 SLC25A32Q9H2D1 315 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 BICC1Q9H694 974 aaKnown RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 XPR1Q9UBH6 696 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 MORF4L1Q9UBU8 362 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 FEM1BQ9UK73 627 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 C19orf53Q9UNZ5 99 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 DERAQ9Y315 318 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 RAD54BQ9Y620 910 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 HS3ST4Q9Y661 456 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 NAV1Q8NEY1 1877 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 TRIM43BA6NCK2 446 aa2.04□□□□□ -2.08
SMCHD1-211ENST00000584897 PRSS47A8MTI9 375 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms