RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SYCP3Q8IZU3 236 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 PIAS4Q8N2W9 510 aaPredicted RBP16.63■□□□□ 0.25
VPS53-218ENST00000575207 HJURPQ8NCD3 748 aaPredicted RBP16.63■□□□□ 0.25
VPS53-218ENST00000575207 SCG3Q8WXD2 468 aaKnown RBP16.63■□□□□ 0.25
VPS53-218ENST00000575207 SLC17A9Q9BYT1 436 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 SPRY4Q9C004 299 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 OLA1Q9NTK5 396 aaKnown RBP16.63■□□□□ 0.25
VPS53-218ENST00000575207 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.63■□□□□ 0.25
VPS53-218ENST00000575207 SIRPGQ9P1W8 387 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 HMGXB4Q9UGU5 601 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 PKDREJQ9NTG1 2253 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 NBEAL1Q6ZS30 2694 aa16.63■□□□□ 0.25
VPS53-218ENST00000575207 GOLGA6L7A0A1B0GV03 622 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 CBX6O95503 412 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 PAK4O96013 591 aaPredicted RBP16.62■□□□□ 0.25
VPS53-218ENST00000575207 TNNI1P19237 187 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 MAP4P27816 1152 aaKnown RBP16.62■□□□□ 0.25
VPS53-218ENST00000575207 VASPP50552 380 aaPredicted RBP16.62■□□□□ 0.25
VPS53-218ENST00000575207 NDST1P52848 882 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 PFN3P60673 137 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 CDH18Q13634 790 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 CEP135Q66GS9 1140 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 SPRED1Q7Z699 444 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 UNC93AQ86WB7 457 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 APCDD1Q8J025 514 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 CARNMT1Q8N4J0 409 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 Q8N9G6 341 aaPredicted RBP16.62■□□□□ 0.25
VPS53-218ENST00000575207 PCDH19Q8TAB3 1148 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 C8orf76Q96K31 380 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 PRICKLE1Q96MT3 831 aaPredicted RBP16.62■□□□□ 0.25
VPS53-218ENST00000575207 ASPSCR1Q9BZE9 553 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 SLC13A1Q9BZW2 595 aa16.62■□□□□ 0.25
VPS53-218ENST00000575207 ZNF469Q96JG9 3925 aaPredicted RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 STX6O43752 255 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 PCDH8O95206 1070 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 CELA2BP08218 269 aaPredicted RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 DLATP10515 647 aaKnown RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 ME3Q16798 604 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 NLGN4XQ8N0W4 816 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 FSTL5Q8N475 847 aaPredicted RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 NLGN4YQ8NFZ3 816 aaPredicted RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 RAD54LQ92698 747 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 CYFIP2Q96F07 1278 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 LENG8Q96PV6 779 aaPredicted RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 KLF6Q99612 283 aaPredicted RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 REPIN1Q9BWE0 567 aaKnown RBP16.61■□□□□ 0.25
VPS53-218ENST00000575207 SFMBT1Q9UHJ3 866 aa16.61■□□□□ 0.25
VPS53-218ENST00000575207 FPGTO14772 594 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 GLB1P16278 677 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 ITGA3P26006 1051 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 PTGER4P35408 488 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 CASP5P51878 434 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 RPS24P62847 133 aaKnown RBP16.6■□□□□ 0.25
VPS53-218ENST00000575207 ABHD18Q0P651 414 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 ANKRD1Q15327 319 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 ZNF667Q5HYK9 610 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 SCARA5Q6ZMJ2 495 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 CCDC117Q8IWD4 279 aaPredicted RBP16.6■□□□□ 0.25
VPS53-218ENST00000575207 UNC5BQ8IZJ1 945 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 ZNF516Q92618 1163 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.6■□□□□ 0.25
VPS53-218ENST00000575207 DOLKQ9UPQ8 538 aa16.6■□□□□ 0.25
VPS53-218ENST00000575207 M0QYT0 321 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 GCNT3O95395 438 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 PMS2P54278 862 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 RPS21P63220 83 aaKnown RBP16.59■□□□□ 0.25
VPS53-218ENST00000575207 ELOCQ15369 112 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 ZNF699Q32M78 642 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 CCDC112Q8NEF3 446 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 GPR156Q8NFN8 814 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 ART4Q93070 314 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 AZIN2Q96A70 460 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 MYEOVQ96EZ4 313 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 CALML4Q96GE6 196 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 DUSP16Q9BY84 665 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 KIAA1586Q9HCI6 787 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 LATS2Q9NRM7 1088 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 GPR34Q9UPC5 381 aa16.59■□□□□ 0.25
VPS53-218ENST00000575207 TYW5A2RUC4 315 aaKnown RBP16.58■□□□□ 0.24
VPS53-218ENST00000575207 BHMG1C9JSJ3 638 aaPredicted RBP16.58■□□□□ 0.24
VPS53-218ENST00000575207 ATP9BO43861 1147 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 ACSL4O60488 711 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 CLSTN1O94985 981 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 LUC7L3O95232 432 aaKnown RBP16.58■□□□□ 0.24
VPS53-218ENST00000575207 CPNE6O95741 557 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 ALPIP09923 528 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 ZNF18P17022 549 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 PDCP20941 246 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 SLC11A2P49281 568 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 SULT2A1Q06520 285 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 RAB41Q5JT25 222 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 CERCAMQ5T4B2 595 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 FAXCQ5TGI0 409 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 KIAA1161Q6NSJ0 714 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 PIM3Q86V86 326 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 RCBTB1Q8NDN9 531 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 TBC1D7Q9P0N9 293 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 KCND3Q9UK17 655 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 POLHQ9Y253 713 aa16.58■□□□□ 0.24
VPS53-218ENST00000575207 TNRC6AQ8NDV7 1962 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 957.7 ms