RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RRP8O43159 456 aaKnown RBP21.54■■□□□ 1.04
VPS53-216ENST00000574029 GIMD1P0DJR0 217 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 AKT2P31751 481 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 CAMK4Q16566 473 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 MAN2A1Q16706 1144 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 ARSIQ5FYB1 569 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 C22orf39Q6P5X5 142 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 GCNT7Q6ZNI0 430 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 OR13H1Q8NG92 308 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 BAP1Q92560 729 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 FZD3Q9NPG1 666 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 TMPRSS4Q9NRS4 437 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 SHROOM3Q8TF72 1996 aa21.54■■□□□ 1.04
VPS53-216ENST00000574029 BRINP1O60477 761 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 ZNF821O75541 412 aaPredicted RBP21.53■■□□□ 1.04
VPS53-216ENST00000574029 PIAS2O75928 621 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 OR1E1P30953 314 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 DAB2P98082 770 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 TMEM259Q4ZIN3 620 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 ZNF783Q6ZMS7 281 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 DPY19L3Q6ZPD9 716 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 BNIPLQ7Z465 357 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 TFAP2DQ7Z6R9 452 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 ABI3BPQ7Z7G0 1075 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 SLC22A18ASQ8N1D0 253 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 FAM174AQ8TBP5 190 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 FGF11Q92914 225 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 C18orf8Q96DM3 657 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 IFT43Q96FT9 208 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 PPP1R16AQ96I34 528 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 TNKS2Q9H2K2 1166 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 ZNF212Q9UDV6 495 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 WASF2Q9Y6W5 498 aa21.53■■□□□ 1.04
VPS53-216ENST00000574029 ILVBLA1L0T0 632 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 LEFTY1O75610 366 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 ZMPSTE24O75844 475 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 PCDH8O95206 1070 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 MT-CO3P00414 261 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 CKMT1AP12532 417 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 CYP11B1P15538 503 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 RECQLP46063 649 aaPredicted RBP21.52■■□□□ 1.04
VPS53-216ENST00000574029 CLDN2P57739 230 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 HS1BP3Q53T59 392 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 FAM102AQ5T9C2 384 aaPredicted RBP21.52■■□□□ 1.04
VPS53-216ENST00000574029 SEL1L3Q68CR1 1132 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 XYLT1Q86Y38 959 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 MLKLQ8NB16 471 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 OR7D4Q8NG98 312 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 GRIN3AQ8TCU5 1115 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 HAPLN3Q96S86 360 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 CALN1Q9BXU9 219 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 CEP44Q9C0F1 390 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 PDCL3Q9H2J4 239 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 GPR27Q9NS67 375 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 RAI2Q9Y5P3 530 aa21.52■■□□□ 1.04
VPS53-216ENST00000574029 TDRD6O60522 2096 aaKnown RBP21.51■■□□□ 1.03
VPS53-216ENST00000574029 FFAR2O15552 330 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 ACTN2P35609 894 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 FLT3P36888 993 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 SERPINH1P50454 418 aaKnown RBP21.51■■□□□ 1.03
VPS53-216ENST00000574029 NEK3P51956 506 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 SLC20A2Q08357 652 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 TRNP1Q6NT89 227 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 RETSATQ6NUM9 610 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 ERICH1Q86X53 443 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 DCP2Q8IU60 420 aaKnown RBP21.51■■□□□ 1.03
VPS53-216ENST00000574029 NDST4Q9H3R1 872 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 CAAP1Q9H8G2 361 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 NLGN3Q9NZ94 848 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 HS3ST3A1Q9Y663 406 aa21.51■■□□□ 1.03
VPS53-216ENST00000574029 A6NNZ2 444 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 TK2O00142 265 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 SRGAP2O75044 1071 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 ENDOD1O94919 500 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 DRAP1Q14919 205 aaPredicted RBP21.5■■□□□ 1.03
VPS53-216ENST00000574029 TBC1D25Q3MII6 688 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 VWA3BQ502W6 1294 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 MIIPQ5JXC2 388 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 CDCP2Q5VXM1 449 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 KIAA1161Q6NSJ0 714 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 KDM7AQ6ZMT4 941 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 Q6ZSR6 202 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 TMC6Q7Z403 805 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 PCDH20Q8N6Y1 951 aaKnown RBP21.5■■□□□ 1.03
VPS53-216ENST00000574029 BMFQ96LC9 184 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 SPON2Q9BUD6 331 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 SLC17A9Q9BYT1 436 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 ZYG11BQ9C0D3 744 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 TMEM59LQ9UK28 342 aa21.5■■□□□ 1.03
VPS53-216ENST00000574029 SMG1Q96Q15 3661 aaKnown RBP21.5■■□□□ 1.03
VPS53-216ENST00000574029 ALPPL2P10696 532 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 ADRB3P13945 408 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 ITGB7P26010 798 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 L1CAMP32004 1257 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 UBE2HP62256 183 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 RPS21P63220 83 aaKnown RBP21.49■■□□□ 1.03
VPS53-216ENST00000574029 ARF5P84085 180 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 RAPGEF1Q13905 1077 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 FGL2Q14314 439 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 TPD52L1Q16890 204 aaPredicted RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms