RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 STARD3Q14849 445 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 C2orf27AQ580R0 203 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 ANKRD20A8PQ5CZ79 823 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 NT5DC3Q86UY8 548 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 CAMKK1Q8N5S9 505 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 CASKIN2Q8WXE0 1202 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 ARHGEF2Q92974 986 aaKnown RBP21.04■□□□□ 0.96
VPS53-210ENST00000571456 SCNM1Q9BWG6 230 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 MAK16Q9BXY0 300 aaKnown RBP21.04■□□□□ 0.96
VPS53-210ENST00000571456 ERVW-1Q9UQF0 538 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 HS3ST2Q9Y278 367 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 EFR3BQ9Y2G0 817 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 RAD54BQ9Y620 910 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 CKAP5Q14008 2032 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 ZBTB24O43167 697 aaPredicted RBP21.03■□□□□ 0.96
VPS53-210ENST00000571456 DGKEP52429 567 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 RWDD2BP57060 319 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 TFDP2Q14188 446 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 ZNF234Q14588 700 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 ATP13A4Q4VNC1 1196 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 TMCO4Q5TGY1 634 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 AFMIDQ63HM1 303 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 EGFLAMQ63HQ2 1017 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 SERPINA13PQ6UXR4 307 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 CPNE8Q86YQ8 564 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 APCDD1Q8J025 514 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 ALLCQ8N6M5 410 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.03■□□□□ 0.96
VPS53-210ENST00000571456 RNF157Q96PX1 679 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 LRRC19Q9H756 370 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 POLMQ9NP87 494 aaPredicted RBP21.03■□□□□ 0.96
VPS53-210ENST00000571456 CAPN6Q9Y6Q1 641 aa21.03■□□□□ 0.96
VPS53-210ENST00000571456 MUC22E2RYF6 1773 aaPredicted RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 PCNX2A6NKB5 2137 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 ADAMTS20P59510 1910 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 A0A0D9SEW6 157 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 RASA4BC9J798 803 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 RASA4O43374 803 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 KDELR3O43731 214 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 KLF8O95600 359 aaPredicted RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 PAFAH1B3Q15102 231 aaKnown RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 PPP2R5EQ16537 467 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 TAZQ16635 292 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 PTPRNQ16849 979 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 FNDC3BQ53EP0 1204 aaKnown RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 TFDP3Q5H9I0 405 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 TCEAL6Q6IPX3 200 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 BZW1Q7L1Q6 419 aaKnown RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 TXNDC5Q8NBS9 432 aaKnown RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 OR52K2Q8NGK3 314 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 RAPGEF5Q92565 580 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 TCEAL3Q969E4 200 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 EDEM2Q9BV94 578 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 TMEM245Q9H330 911 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 GOLPH3Q9H4A6 298 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 NDFIP2Q9NV92 336 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 VPS51Q9UID3 782 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 HYOU1Q9Y4L1 999 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 STON1Q9Y6Q2 735 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 ASCC3Q8N3C0 2202 aaKnown RBP21.02■□□□□ 0.96
VPS53-210ENST00000571456 MAST4O15021 2626 aa21.02■□□□□ 0.96
VPS53-210ENST00000571456 TARSL2A2RTX5 802 aaKnown RBP21.01■□□□□ 0.95
VPS53-210ENST00000571456 C4orf47A7E2U8 309 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 ALDH1A2O94788 518 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 CD48P09326 243 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 HOXB2P14652 356 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 AMPD1P23109 780 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 PTPN7P35236 360 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 SERINC3Q13530 473 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 CRY1Q16526 586 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 INO80DQ53TQ3 878 aaPredicted RBP21.01■□□□□ 0.95
VPS53-210ENST00000571456 EMC10Q5UCC4 262 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 SFTPA1Q8IWL2 248 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 HES6Q96HZ4 224 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 ZNF830Q96NB3 372 aaPredicted RBP21.01■□□□□ 0.95
VPS53-210ENST00000571456 PSMB7Q99436 277 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 SPON2Q9BUD6 331 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 CEP44Q9C0F1 390 aa21.01■□□□□ 0.95
VPS53-210ENST00000571456 CCDC163A0A0D9SF12 145 aa21■□□□□ 0.95
VPS53-210ENST00000571456 A0A0U1RQJ8 604 aa21■□□□□ 0.95
VPS53-210ENST00000571456 C3orf70A6NLC5 250 aaPredicted RBP21■□□□□ 0.95
VPS53-210ENST00000571456 CBX4O00257 560 aa21■□□□□ 0.95
VPS53-210ENST00000571456 ATP9BO43861 1147 aa21■□□□□ 0.95
VPS53-210ENST00000571456 SYNCRIPO60506 623 aaKnown RBP21■□□□□ 0.95
VPS53-210ENST00000571456 ZMPSTE24O75844 475 aa21■□□□□ 0.95
VPS53-210ENST00000571456 TNNT1P13805 278 aa21■□□□□ 0.95
VPS53-210ENST00000571456 MX2P20592 715 aa21■□□□□ 0.95
VPS53-210ENST00000571456 PEX5P50542 639 aa21■□□□□ 0.95
VPS53-210ENST00000571456 SLC9A4Q6AI14 798 aa21■□□□□ 0.95
VPS53-210ENST00000571456 OR7D4Q8NG98 312 aa21■□□□□ 0.95
VPS53-210ENST00000571456 PCDH19Q8TAB3 1148 aa21■□□□□ 0.95
VPS53-210ENST00000571456 ZC3H10Q96K80 434 aaKnown RBP21■□□□□ 0.95
VPS53-210ENST00000571456 MRGPRX3Q96LB0 322 aa21■□□□□ 0.95
VPS53-210ENST00000571456 CCDC114Q96M63 670 aa21■□□□□ 0.95
VPS53-210ENST00000571456 KLC2Q9H0B6 622 aa21■□□□□ 0.95
VPS53-210ENST00000571456 NOL6Q9H6R4 1146 aaKnown RBP21■□□□□ 0.95
VPS53-210ENST00000571456 HCN2Q9UL51 889 aa21■□□□□ 0.95
VPS53-210ENST00000571456 CACNA1EQ15878 2313 aa21■□□□□ 0.95
VPS53-210ENST00000571456 EDDM13A0A1B0GTR0 161 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 SGK1O00141 431 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms