RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CMKLR1Q99788 373 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 CPEB1Q9BZB8 566 aaKnown RBP18.51■□□□□ 0.55
CLK3-227ENST00000570296 FARP1Q9Y4F1 1045 aaPredicted RBP18.51■□□□□ 0.55
CLK3-227ENST00000570296 ESPL1Q14674 2120 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 ZFHX3Q15911 3703 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 HIVEP3Q5T1R4 2406 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 VPS37CA5D8V6 355 aaPredicted RBP18.5■□□□□ 0.55
CLK3-227ENST00000570296 FPGTO14772 594 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 RAD51BO15315 384 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 YY2O15391 372 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 CTSLP07711 333 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 MAPK10P53779 464 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 ZFP36L1Q07352 338 aaKnown RBP18.5■□□□□ 0.55
CLK3-227ENST00000570296 NNTQ13423 1086 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 FGL2Q14314 439 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 GOLGA7BQ2TAP0 167 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 TPRG1LQ5T0D9 272 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 C1orf220Q5T0J3 134 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 ERN2Q76MJ5 926 aaKnown RBP18.5■□□□□ 0.55
CLK3-227ENST00000570296 ZSCAN30Q86W11 494 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 CCDC150Q8NCX0 1101 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 GPBAR1Q8TDU6 330 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 IRGQQ8WZA9 623 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 RNF34Q969K3 372 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 FAXDC2Q96IV6 333 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 SERPINB11Q96P15 392 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 PPP1R9BQ96SB3 815 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 LRRC61Q9BV99 259 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 HDAC8Q9BY41 377 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 LRRN3Q9H3W5 708 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 CUEDC1Q9NWM3 386 aaPredicted RBP18.5■□□□□ 0.55
CLK3-227ENST00000570296 TLR6Q9Y2C9 796 aa18.5■□□□□ 0.55
CLK3-227ENST00000570296 NUMBP49757 651 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 C1orf61Q13536 156 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 LACTB2Q53H82 288 aaPredicted RBP18.49■□□□□ 0.55
CLK3-227ENST00000570296 ZNF787Q6DD87 383 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 UNC13DQ70J99 1090 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 PHACTR4Q8IZ21 702 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 OR6C4Q8NGE1 309 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 TAS1R2Q8TE23 839 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 CCDC114Q96M63 670 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 LENG8Q96PV6 779 aaPredicted RBP18.49■□□□□ 0.55
CLK3-227ENST00000570296 SLC13A1Q9BZW2 595 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 TCEAL2Q9H3H9 227 aaPredicted RBP18.49■□□□□ 0.55
CLK3-227ENST00000570296 CUEDC2Q9H467 287 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 CISHQ9NSE2 258 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 GULP1Q9UBP9 304 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 HESX1Q9UBX0 185 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 TSPAN16Q9UKR8 245 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 NAALADL1Q9UQQ1 740 aa18.49■□□□□ 0.55
CLK3-227ENST00000570296 PRRC2CQ9Y520 2896 aaKnown RBP18.48■□□□□ 0.55
CLK3-227ENST00000570296 ZNF891A8MT65 544 aaPredicted RBP18.48■□□□□ 0.55
CLK3-227ENST00000570296 BNIP3LO60238 219 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 PAK4O96013 591 aaPredicted RBP18.48■□□□□ 0.55
CLK3-227ENST00000570296 PRNPP04156 253 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 KRT7P08729 469 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 ITGB7P26010 798 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 CHRNA3P32297 505 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 UQCRFS1P47985 274 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 NUCB2P80303 420 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 PTK2BQ14289 1009 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 CAPRIN2Q6IMN6 1127 aaKnown RBP18.48■□□□□ 0.55
CLK3-227ENST00000570296 SH2D3CQ8N5H7 860 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 KYQ8NBH2 561 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 SCG3Q8WXD2 468 aaKnown RBP18.48■□□□□ 0.55
CLK3-227ENST00000570296 NKD1Q969G9 470 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 ABHD17AQ96GS6 310 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 SLC39A13Q96H72 371 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 FEM1CQ96JP0 617 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 CDH19Q9H159 772 aa18.48■□□□□ 0.55
CLK3-227ENST00000570296 VPS4BO75351 444 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 MOCS2O96007 188 aaPredicted RBP18.47■□□□□ 0.55
CLK3-227ENST00000570296 LTFP02788 710 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 SETSIPP0DME0 302 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 TSHRP16473 764 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 TACR2P21452 398 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 DCTP40126 519 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 RECQLP46063 649 aaPredicted RBP18.47■□□□□ 0.55
CLK3-227ENST00000570296 PFN3P60673 137 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 E2F4Q16254 413 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 LVRNQ6Q4G3 990 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 CHSY1Q86X52 802 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 CCAR2Q8N163 923 aaKnown RBP18.47■□□□□ 0.55
CLK3-227ENST00000570296 GALNT11Q8NCW6 608 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 JPH3Q8WXH2 748 aaPredicted RBP18.47■□□□□ 0.55
CLK3-227ENST00000570296 KLF6Q99612 283 aaPredicted RBP18.47■□□□□ 0.55
CLK3-227ENST00000570296 C7orf25Q9BPX7 421 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 CLPBQ9H078 707 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 SLC39A2Q9NP94 309 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 VPS4AQ9UN37 437 aa18.47■□□□□ 0.55
CLK3-227ENST00000570296 MORC2Q9Y6X9 1032 aaPredicted RBP18.47■□□□□ 0.55
CLK3-227ENST00000570296 A1L4Q6 167 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 PRR19A6NJB7 356 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 M0QYT0 321 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 CAPN5O15484 640 aaPredicted RBP18.46■□□□□ 0.55
CLK3-227ENST00000570296 LCP1P13796 627 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 LIFP15018 202 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 THOP1P52888 689 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 MLLT10P55197 1068 aa18.46■□□□□ 0.55
CLK3-227ENST00000570296 TTC39BQ5VTQ0 682 aaPredicted RBP18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms