RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ERN2Q76MJ5 926 aaKnown RBP19.13■□□□□ 0.65
CLN3-218ENST00000565688 KANSL1Q7Z3B3 1105 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 HORMAD1Q86X24 394 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 OR7D4Q8NG98 312 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ENOX1Q8TC92 643 aaKnown RBP19.13■□□□□ 0.65
CLN3-218ENST00000565688 ARRDC3Q96B67 414 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 TNKS2Q9H2K2 1166 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ATP13A1Q9HD20 1204 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 SCUBE2Q9NQ36 999 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 TAB2Q9NYJ8 693 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 ZNF212Q9UDV6 495 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 DAAM1Q9Y4D1 1078 aa19.13■□□□□ 0.65
CLN3-218ENST00000565688 IGSF10Q6WRI0 2623 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 CKMT2P17540 419 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 SERPINH1P50454 418 aaKnown RBP19.12■□□□□ 0.65
CLN3-218ENST00000565688 ATP11AP98196 1134 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 CDR2Q01850 454 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 GNA12Q03113 381 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 ARSIQ5FYB1 569 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 ARTNQ5T4W7 220 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 C19orf48Q6RUI8 117 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 DPY19L3Q6ZPD9 716 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 PCDH20Q8N6Y1 951 aaKnown RBP19.12■□□□□ 0.65
CLN3-218ENST00000565688 CHST14Q8NCH0 376 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 FAM174AQ8TBP5 190 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 GRIN3AQ8TCU5 1115 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 GANQ9H2C0 597 aa19.12■□□□□ 0.65
CLN3-218ENST00000565688 METTL5Q9NRN9 209 aaKnown RBP19.12■□□□□ 0.65
CLN3-218ENST00000565688 NOCTQ9UK39 431 aaKnown RBP19.12■□□□□ 0.65
CLN3-218ENST00000565688 KNTC1P50748 2209 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 FAM170AA1A519 330 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 LEFTY1O75610 366 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 ZMPSTE24O75844 475 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 GFPT2O94808 682 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 PCDH8O95206 1070 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 CYP1A1P04798 512 aaPredicted RBP19.11■□□□□ 0.65
CLN3-218ENST00000565688 THEGLP0DJG4 465 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 PRLRP16471 622 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 HNRNPA2B1P22626 353 aaKnown RBP19.11■□□□□ 0.65
CLN3-218ENST00000565688 MMP8P22894 467 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 GLDCP23378 1020 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 NRG1Q02297 640 aaPredicted RBP19.11■□□□□ 0.65
CLN3-218ENST00000565688 TRIM72Q6ZMU5 477 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 NXPE2Q96DL1 559 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 KLHL11Q9NVR0 708 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 OR12D3Q9UGF7 316 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 CA5BQ9Y2D0 317 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 ADAMTS20P59510 1910 aa19.11■□□□□ 0.65
CLN3-218ENST00000565688 DOCK4Q8N1I0 1966 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 CELSR3Q9NYQ7 3312 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 ZNF821O75541 412 aaPredicted RBP19.1■□□□□ 0.65
CLN3-218ENST00000565688 ITGB7P26010 798 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 SDC4P31431 198 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 ADRA1BP35368 520 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 SOX5P35711 763 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 NEK3P51956 506 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 GEMIN4P57678 1058 aaKnown RBP19.1■□□□□ 0.65
CLN3-218ENST00000565688 POLR2FP61218 127 aaKnown RBP19.1■□□□□ 0.65
CLN3-218ENST00000565688 ZNF211Q13398 564 aaPredicted RBP19.1■□□□□ 0.65
CLN3-218ENST00000565688 COL28A1Q2UY09 1125 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 TMEM259Q4ZIN3 620 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 HS1BP3Q53T59 392 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 CARD16Q5EG05 197 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 FKBP15Q5T1M5 1219 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 CDKAL1Q5VV42 579 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 ZSCAN30Q86W11 494 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 DRC7Q8IY82 874 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 EMC1Q8N766 993 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 SLC20A1Q8WUM9 679 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 KLK6Q92876 244 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 ISG20Q96AZ6 181 aaKnown RBP19.1■□□□□ 0.65
CLN3-218ENST00000565688 MYOCQ99972 504 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 HEPHQ9BQS7 1158 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 VPS16Q9H269 839 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 FAM207AQ9NSI2 230 aaPredicted RBP19.1■□□□□ 0.65
CLN3-218ENST00000565688 WASF2Q9Y6W5 498 aa19.1■□□□□ 0.65
CLN3-218ENST00000565688 SDC3O75056 442 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 ACP1P24666 158 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 L1CAMP32004 1257 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 MAPKAPK2P49137 400 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 DNA2P51530 1060 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 JAM2P57087 298 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 RPS21P63220 83 aaKnown RBP19.09■□□□□ 0.65
CLN3-218ENST00000565688 ARF5P84085 180 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 FMO1Q01740 532 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 KRT31Q15323 416 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 CDO1Q16878 200 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 PROX2Q3B8N5 592 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 HES3Q5TGS1 186 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 KIAA1161Q6NSJ0 714 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 FBXL19Q6PCT2 694 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 STRADAQ7RTN6 431 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 PDZD3Q86UT5 571 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 DCP2Q8IU60 420 aaKnown RBP19.09■□□□□ 0.65
CLN3-218ENST00000565688 PLPP6Q8IY26 295 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 HNRNPLLQ8WVV9 542 aaKnown RBP19.09■□□□□ 0.65
CLN3-218ENST00000565688 RXFP2Q8WXD0 754 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 IFT43Q96FT9 208 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 FEM1CQ96JP0 617 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 OSBPL2Q9H1P3 480 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms