RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 GLDCP23378 1020 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 EEF1GP26641 437 aaKnown RBP17.49■□□□□ 0.39
CLN3-216ENST00000565316 HNF1BP35680 557 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 NOMO3P69849 1222 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 PROX2Q3B8N5 592 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 C2CD6Q53TS8 623 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 TCP11X2Q5H9J9 407 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 DPY19L3Q6ZPD9 716 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 ERN2Q76MJ5 926 aaKnown RBP17.49■□□□□ 0.39
CLN3-216ENST00000565316 CACTIN-AS1Q8N1I8 211 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 SLC25A45Q8N413 288 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 MSANTD4Q8NCY6 345 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 HNRNPLLQ8WVV9 542 aaKnown RBP17.49■□□□□ 0.39
CLN3-216ENST00000565316 CPA5Q8WXQ8 436 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 ZYG11BQ9C0D3 744 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 KLHL11Q9NVR0 708 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 IL36AQ9UHA7 158 aa17.49■□□□□ 0.39
CLN3-216ENST00000565316 CXorf51AA0A1B0GTR3 108 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 GOLGA8SH3BPF8 625 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 SRGAP2O75044 1071 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 MMEP08473 750 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 THEGLP0DJG4 465 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 PRLRP16471 622 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 ACP1P24666 158 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 SERPINH1P50454 418 aaKnown RBP17.48■□□□□ 0.39
CLN3-216ENST00000565316 CLDN6P56747 220 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 NRG1Q02297 640 aaPredicted RBP17.48■□□□□ 0.39
CLN3-216ENST00000565316 ZNF211Q13398 564 aaPredicted RBP17.48■□□□□ 0.39
CLN3-216ENST00000565316 COL9A2Q14055 689 aaPredicted RBP17.48■□□□□ 0.39
CLN3-216ENST00000565316 TMEM259Q4ZIN3 620 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 ARSIQ5FYB1 569 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 RETSATQ6NUM9 610 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 FAM131BQ86XD5 332 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 ZNF677Q86XU0 584 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 RFFLQ8WZ73 363 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 CFAP57Q96MR6 1250 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 GANQ9H2C0 597 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 TNKS2Q9H2K2 1166 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 DYRK4Q9NR20 520 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 NOCTQ9UK39 431 aaKnown RBP17.48■□□□□ 0.39
CLN3-216ENST00000565316 ZFR2Q9UPR6 939 aaKnown RBP17.48■□□□□ 0.39
CLN3-216ENST00000565316 WASF2Q9Y6W5 498 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 DOCK9Q9BZ29 2069 aa17.48■□□□□ 0.39
CLN3-216ENST00000565316 PES1O00541 588 aaKnown RBP17.47■□□□□ 0.39
CLN3-216ENST00000565316 TRIM38O00635 465 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 LEFTY1O75610 366 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 AKT2P31751 481 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 RECQLP46063 649 aaPredicted RBP17.47■□□□□ 0.39
CLN3-216ENST00000565316 GNA12Q03113 381 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 TARDBPQ13148 414 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-216ENST00000565316 HES3Q5TGS1 186 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 MANEALQ5VSG8 457 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 NAA35Q5VZE5 725 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 ABI3BPQ7Z7G0 1075 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 PCDH20Q8N6Y1 951 aaKnown RBP17.47■□□□□ 0.39
CLN3-216ENST00000565316 GRIN3AQ8TCU5 1115 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 KLK6Q92876 244 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 NXPE2Q96DL1 559 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 PPP1R16AQ96I34 528 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 SPON2Q9BUD6 331 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 NUP62CLQ9H1M0 184 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 RETREG1Q9H6L5 497 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 DOCK4Q8N1I0 1966 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 FAM170AA1A519 330 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 SIGLEC6O43699 453 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 SDC3O75056 442 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 CD160O95971 181 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 CYP1A1P04798 512 aaPredicted RBP17.47■□□□□ 0.39
CLN3-216ENST00000565316 HNRNPA2B1P22626 353 aaKnown RBP17.47■□□□□ 0.39
CLN3-216ENST00000565316 MMP8P22894 467 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 DGKAP23743 735 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 ITGB7P26010 798 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 ARF5P84085 180 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 RTP5Q14D33 572 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 SOWAHCQ53LP3 525 aaPredicted RBP17.47■□□□□ 0.39
CLN3-216ENST00000565316 CARD16Q5EG05 197 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 GCNT7Q6ZNI0 430 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 PLPP6Q8IY26 295 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 OR13H1Q8NG92 308 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 FAM174AQ8TBP5 190 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 SLC20A1Q8WUM9 679 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 IFT43Q96FT9 208 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 HEPHQ9BQS7 1158 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 NRSN2Q9GZP1 204 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 ATP13A1Q9HD20 1204 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 FZD3Q9NPG1 666 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 GPR27Q9NS67 375 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 HS3ST3A1Q9Y663 406 aa17.47■□□□□ 0.39
CLN3-216ENST00000565316 PCDH8O95206 1070 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 CHRNB2P17787 502 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 ADRA1BP35368 520 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 NEK3P51956 506 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 JAM2P57087 298 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 FMO1Q01740 532 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 CDR2Q01850 454 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 CCDC14Q49A88 953 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 RAB6CQ53S08 254 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 CDKAL1Q5VV42 579 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 SEL1L3Q68CR1 1132 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 NLRP14Q86W24 1093 aa17.46■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms