RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MEA1Q16626 185 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 POM121L1PQ3SYA9 428 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TTC39BQ5VTQ0 682 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 MBLAC2Q68D91 279 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 PMF1Q6P1K2 205 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 USP30Q70CQ3 517 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TMC6Q7Z403 805 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 SPATS2Q86XZ4 545 aaKnown RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 DCBLD1Q8N8Z6 715 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 FIBINQ8TAL6 211 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 LMO3Q8TAP4 145 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TFAP2BQ92481 460 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TTC17Q96AE7 1141 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 EAF1Q96JC9 268 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CEP63Q96MT8 703 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TIGD1Q96MW7 591 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TMEM74Q96NL1 305 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 ZSWIM1Q9BR11 485 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TRIM56Q9BRZ2 755 aaKnown RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 RSPH9Q9H1X1 276 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 NEUROG2Q9H2A3 272 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 PABPC3Q9H361 631 aaKnown RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 SUN2Q9UH99 717 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CNTN6Q9UQ52 1028 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 NCKAP1Q9Y2A7 1128 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 CA5BQ9Y2D0 317 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 EFR3BQ9Y2G0 817 aa10.34□□□□□ -0.75
SCFD1-220ENST00000556486 ARID1BQ8NFD5 2236 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 TDRD6O60522 2096 aaKnown RBP10.34□□□□□ -0.75
SCFD1-220ENST00000556486 SPTA1P02549 2419 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 TRIM38O00635 465 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 FFAR2O15552 330 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SART1O43290 800 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 MSI1O43347 362 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SIGLEC6O43699 453 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 ACSL4O60488 711 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SIN3BO75182 1162 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 USP12O75317 370 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SMC2O95347 1197 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 LTFP02788 710 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 ASLP04424 464 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 FYNP06241 537 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 MAT2AP31153 395 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SLC6A4P31645 630 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 PSMD8P48556 350 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 NXPH1P58417 271 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 NFATC3Q12968 1075 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 HNRNPA1L2Q32P51 320 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SFMBT2Q5VUG0 894 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 RFWD3Q6PCD5 774 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 TMEM270Q6UE05 265 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 MMAAQ8IVH4 418 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 HJURPQ8NCD3 748 aaPredicted RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 UBA3Q8TBC4 463 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 SLC39A13Q96H72 371 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 DHTKD1Q96HY7 919 aaPredicted RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 PRICKLE1Q96MT3 831 aaPredicted RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 NT5C1BQ96P26 610 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 MYOCQ99972 504 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 OMDQ99983 421 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 DDX50Q9BQ39 737 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 GMPR2Q9P2T1 348 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 TPX2Q9ULW0 747 aaKnown RBP10.33□□□□□ -0.76
SCFD1-220ENST00000556486 TLR6Q9Y2C9 796 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 ITIH6Q6UXX5 1313 aa10.33□□□□□ -0.76
SCFD1-220ENST00000556486 GOLGA6L7A0A1B0GV03 622 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 A0A1W2PNR3 127 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 PMS2P1A4D2B8 440 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 RNF225M0QZC1 329 aaPredicted RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 TLR4O00206 839 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 PSMA7O14818 248 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 CDK4P11802 303 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 POLR2EP19388 210 aaKnown RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 HSD3B2P26439 372 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 MSX1P28360 303 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 METAP1P53582 386 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 EIF4EBP2Q13542 120 aaPredicted RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 COLEC12Q5KU26 742 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 NADSYN1Q6IA69 706 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 FOXR1Q6PIV2 292 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 KANSL1Q7Z3B3 1105 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 OR14C36Q8NHC7 312 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 SKA1Q96BD8 255 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 MED8Q96G25 268 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 HIC2Q96JB3 615 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 VCPIP1Q96JH7 1222 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 FCRL2Q96LA5 508 aaPredicted RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 MRGPRX3Q96LB0 322 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 SERPINB11Q96P15 392 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 TRIM62Q9BVG3 475 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 ATP13A2Q9NQ11 1180 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 UCKL1Q9NWZ5 548 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 HOOK1Q9UJC3 728 aaKnown RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 INTS6Q9UL03 887 aaKnown RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 PPM1HQ9ULR3 514 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 FZD4Q9ULV1 537 aa10.32□□□□□ -0.76
SCFD1-220ENST00000556486 UTP20O75691 2785 aaKnown RBP10.32□□□□□ -0.76
SCFD1-220ENST00000556486 TEX15Q9BXT5 2789 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 A0A1B0GTH6 734 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TARSL2A2RTX5 802 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms