RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 RWDD4Q6NW29 188 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 LINGO4Q6UY18 593 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 OR14C36Q8NHC7 312 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 CASKIN2Q8WXE0 1202 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 HDAC8Q9BY41 377 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 DMTF1Q9Y222 760 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 ANKRD6Q9Y2G4 727 aa16.38■□□□□ 0.21
CCDC88C-209ENST00000554872 ACACBO00763 2458 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 A0A1B0GVT2 93 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 GIPC1O14908 333 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 ACVRL1P37023 503 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 CTSKP43235 329 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 RECQLP46063 649 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 CSNK1EP49674 416 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 NUMBP49757 651 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 METAP1P53582 386 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 ACAP1Q15027 740 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 ZNF423Q2M1K9 1284 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 KIF19Q2TAC6 998 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 HLA-BQ31612 363 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 PARP15Q460N3 678 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 PIP5KL1Q5T9C9 394 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 GLRX5Q86SX6 157 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 ZSCAN30Q86W11 494 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 UMODL1-AS1Q8N2C9 162 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 DEFB124Q8NES8 71 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 OR2I1PQ8NGU4 316 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 SKA1Q96BD8 255 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 PPP1R16AQ96I34 528 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 LRIG1Q96JA1 1093 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 SPON2Q9BUD6 331 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 NOL6Q9H6R4 1146 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 GAREM1Q9H706 876 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 CATSPERBQ9H7T0 1116 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 EBF2Q9HAK2 575 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 MRPL47Q9HD33 250 aaKnown RBP16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 IL36AQ9UHA7 158 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 ANGPTL2Q9UKU9 493 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 HPCAL4Q9UM19 191 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 WASF3Q9UPY6 502 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 WASF2Q9Y6W5 498 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 PCNX2A6NKB5 2137 aa16.37■□□□□ 0.21
CCDC88C-209ENST00000554872 CEP295Q9C0D2 2601 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 PLXNA2O75051 1894 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 A0A1W2PR77 199 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 KDELR3O43731 214 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 EPHB2P29323 1055 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 HNRNPH3P31942 346 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 TAS2R38P59533 333 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 OVGP1Q12889 678 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 POLD3Q15054 466 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 INO80DQ53TQ3 878 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 NAPEPLDQ6IQ20 393 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 DPY19L3Q6ZPD9 716 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 VPS36Q86VN1 386 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 IQCHQ86VS3 1027 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 NAXDQ8IW45 347 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 PYROXD2Q8N2H3 581 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 MAGEB5Q9BZ81 275 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 TM7SF3Q9NS93 570 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 ARHGAP20Q9P2F6 1191 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 CNOT8Q9UFF9 292 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 DNAI1Q9UI46 699 aa16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 FNDC3AQ9Y2H6 1198 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-209ENST00000554872 FAM47DPA6NHR8 397 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 TMCO5BA8MYB1 307 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 FLRT2O43155 660 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 PCDHGA12O60330 932 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 RNGTTO60942 597 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 CBFA2T3O75081 653 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 GSRP00390 522 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 GYPCP04921 128 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 SERPING1P05155 500 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 TPM3P06753 285 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 PSMA2P25787 234 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 ITGB7P26010 798 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 PCK1P35558 622 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 PPP2CBP62714 309 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 PPP2CAP67775 309 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 CARD16Q5EG05 197 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 SCYL2Q6P3W7 929 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 CYP4V2Q6ZWL3 525 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 ARFGAP1Q8N6T3 406 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 CHST14Q8NCH0 376 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 BAHD1Q8TBE0 780 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 ZNF653Q96CK0 615 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 SLC6A18Q96N87 628 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 HEPHQ9BQS7 1158 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 SNX11Q9Y5W9 270 aa16.35■□□□□ 0.21
CCDC88C-209ENST00000554872 CHD8Q9HCK8 2581 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TPRP12270 2363 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3DA0A087WVF3 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3IA0A087WXS9 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3EA0A087X179 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3KA0A087X1G2 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3FA6NER0 549 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3LB9A6J9 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 KPNA3O00505 521 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 YKT6O15498 198 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms