RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PHLDB2Q86SQ0 1253 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 CADM4Q8NFZ8 388 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.75□□□□□ -0.37
SHMT2-214ENST00000554604 TKTL2Q9H0I9 626 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 TMEM51Q9NW97 253 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 SUSD2Q9UGT4 822 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 SLC6A14Q9UN76 642 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 ERVW-1Q9UQF0 538 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 HS3ST4Q9Y661 456 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 CHD8Q9HCK8 2581 aa12.75□□□□□ -0.37
SHMT2-214ENST00000554604 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 KRIT1O00522 736 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 TM4SF5O14894 197 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 ATMINO43313 823 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 HEXIM1O94992 359 aaKnown RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 IGLV3-19P01714 112 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 ENGP17813 658 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 TFE3P19532 575 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 GGCXP38435 758 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 SLC1A1P43005 524 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 CTSOP43234 321 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 CXCR3P49682 368 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 NUMBP49757 651 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 PEX5P50542 639 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 RPS14P62263 151 aaKnown RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 SLC7A5Q01650 507 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 ZBTB16Q05516 673 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 SULT2A1Q06520 285 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 ZNF177Q13360 481 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 HNRNPA1L2Q32P51 320 aaKnown RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 EMBQ6PCB8 327 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 LRRC31Q6UY01 552 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 APCDD1Q8J025 514 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 KDM1BQ8NB78 822 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 GANCQ8TET4 914 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 ALG3Q92685 438 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 IGSF8Q969P0 613 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 NT5C3BQ969T7 300 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 PGAP3Q96FM1 320 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 RPL10LQ96L21 214 aaKnown RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 TBCBQ99426 244 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 GTPBP2Q9BX10 602 aaKnown RBP12.74□□□□□ -0.37
SHMT2-214ENST00000554604 MIR1-1HGQ9H1L0 117 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 MTG2Q9H4K7 406 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 PCDHA3Q9Y5H8 950 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 SCINQ9Y6U3 715 aa12.74□□□□□ -0.37
SHMT2-214ENST00000554604 PCDH15Q96QU1 1955 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 EDDM13A0A1B0GTR0 161 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 TMEM110-MUSTN1A8MSY1 372 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 TTC34A8MYJ7 566 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 CDX4O14627 284 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 RAD51CO43502 376 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 SIN3BO75182 1162 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 CLDN11O75508 207 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 FGGP02679 453 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 SYPP08247 313 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 MYBL2P10244 700 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 RRM1P23921 792 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 MAOBP27338 520 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 MZF1P28698 734 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 FLT3P36888 993 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 GABPB1Q06547 395 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 SFSWAPQ12872 951 aaKnown RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 PTP4A2Q12974 167 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 OTUD1Q5VV17 481 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 PLEKHA7Q6IQ23 1121 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 KLHL7Q8IXQ5 586 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 SNX19Q92543 992 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 CAVIN3Q969G5 261 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 MYO19Q96H55 970 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 MRGPRX3Q96LB0 322 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 C11orf70Q9BRQ4 267 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 BTBD1Q9H0C5 482 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 RSPH9Q9H1X1 276 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 MRPL47Q9HD33 250 aaKnown RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 METTL5Q9NRN9 209 aaKnown RBP12.73□□□□□ -0.37
SHMT2-214ENST00000554604 ARHGEF38Q9NXL2 777 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 LCMT1Q9UIC8 334 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 SLCO3A1Q9UIG8 710 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 NCKAP1Q9Y2A7 1128 aa12.73□□□□□ -0.37
SHMT2-214ENST00000554604 CEP295Q9C0D2 2601 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 GOLGA6L10A0A0M3HER8 536 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 METTL12A8MUP2 240 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 SPOPO43791 374 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 SEMA4FO95754 770 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 CALB1P05937 261 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 MMP8P22894 467 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ACSL1P33121 698 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 RDXP35241 583 aaKnown RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 TNNT3P45378 269 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 STK19P49842 368 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 IRAK1P51617 712 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 PLK1P53350 603 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 CDH4P55283 916 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ATP11AP98196 1134 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ACCSLQ4AC99 568 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ACBD5Q5T8D3 534 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 SEL1L2Q5TEA6 688 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 CXorf57Q6NSI4 855 aaKnown RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ARCQ7LC44 396 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms