RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 HEXIM1O94992 359 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 LATS1O95835 1130 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 PGRP06401 933 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 KRT10P13645 584 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 SYN1P17600 705 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 RPL17P18621 184 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 PAX7P23759 505 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 DNAJB1P25685 340 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 IVDP26440 423 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 KLRC2P26717 231 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CCR1P32246 355 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CTNNB1P35222 781 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 DNA2P51530 1060 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CLCN4P51793 760 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 RABGGTBP53611 331 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 VCPP55072 806 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 CDH6P55285 790 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 RAC1P63000 192 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 DR1Q01658 176 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 TAF10Q12962 218 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 BYSLQ13895 437 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 KCNC3Q14003 757 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 ARL13BQ3SXY8 428 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 ZC3H12AQ5D1E8 599 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 C9orf50Q5SZB4 431 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 NCBP2-AS2Q69YL0 99 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 FBXO38Q6PIJ6 1188 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 UNC5AQ6ZN44 842 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CCDC149Q6ZUS6 474 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 PCGF5Q86SE9 256 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 TMEM150AQ86TG1 271 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 TADA2BQ86TJ2 420 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 ITIH5Q86UX2 942 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 FAM131BQ86XD5 332 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 JAMLQ86YT9 394 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CCDC50Q8IVM0 306 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 SCN4BQ8IWT1 228 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 MREGQ8N565 214 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 ALLCQ8N6M5 410 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 KIAA1958Q8N8K9 716 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 SLC7A14Q8TBB6 771 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CCHCR1Q8TD31 782 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 AENQ8WTP8 325 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 THAP3Q8WTV1 239 aaPredicted RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 RNF139Q8WU17 664 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 FATE1Q969F0 183 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 FBXO32Q969P5 355 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 SEPT5Q99719 369 aaPredicted RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 ERP44Q9BS26 406 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 RAB17Q9H0T7 212 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 PRO3102Q9H379 93 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 PLEKHA4Q9H4M7 779 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 WDCPQ9H6R7 721 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 ARHGEF4Q9NR80 690 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 KLHL11Q9NVR0 708 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 DDIT4Q9NX09 232 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CACNA2D2Q9NY47 1150 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CWC15Q9P013 229 aaKnown RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 AMACRQ9UHK6 382 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 ZMYND8Q9ULU4 1186 aaPredicted RBP8.67□□□□□ -1.02
VPS29-203ENST00000546588 BCLAF3A2AJT9 711 aaKnown RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 KLHL33A6NCF5 533 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 SLC22A31A6NKX4 558 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 FGF10O15520 208 aaPredicted RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 ATP8B1O43520 1251 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ERVFC1P60507 584 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 OTUD4Q01804 1114 aaKnown RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 VEPH1Q14D04 833 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 SHHQ15465 462 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 SPDYCQ5MJ68 293 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 BEND6Q5SZJ8 279 aaPredicted RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 AFMIDQ63HM1 303 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 RNF43Q68DV7 783 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 MRM1Q6IN84 353 aaKnown RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 EMBQ6PCB8 327 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 CCNI2Q6ZMN8 369 aaPredicted RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 RFX8Q6ZV50 586 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 NLRC3Q7RTR2 1065 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ANKRD13BQ86YJ7 626 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 KRTAP19-1Q8IUB9 90 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 FAM217AQ8IXS0 508 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 KLHDC8BQ8IXV7 354 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 IFT20Q8IY31 132 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 TTC30BQ8N4P2 665 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 KCTD6Q8NC69 237 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ACTL9Q8TC94 416 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 SLC22A17Q8WUG5 538 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 POF1BQ8WVV4 589 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 HSPH1Q92598 858 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 CAVIN3Q969G5 261 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 MAGOHBQ96A72 148 aaKnown RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 TGS1Q96RS0 853 aaKnown RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 PRMT1Q99873 361 aaKnown RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 TCF25Q9BQ70 676 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 C17orf80Q9BSJ5 609 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 KRTAP9-9Q9BYP9 154 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 KRTAP9-4Q9BYQ2 154 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 CXorf56Q9H5V9 222 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 FAM204AQ9H8W3 233 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 PCDH9Q9HC56 1237 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms