RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MIER2Q8N344 545 aa15.89■□□□□ 0.14
CUX1-211ENST00000546411 CCDC126Q96EE4 140 aa15.89■□□□□ 0.14
CUX1-211ENST00000546411 QKIQ96PU8 341 aaKnown RBP eCLIP15.89■□□□□ 0.146e-15■■■■□ 22.1
CUX1-211ENST00000546411 COG4Q9H9E3 785 aa15.89■□□□□ 0.14
CUX1-211ENST00000546411 TPBGLP0DKB5 382 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 ZNF252P-AS1Q0IIN9 211 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 LRRC8BQ6P9F7 803 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 RINLQ6ZS11 566 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 ARCQ7LC44 396 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 ELMOD1Q8N336 334 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 DQX1Q8TE96 717 aaKnown RBP15.89■□□□□ 0.13
CUX1-211ENST00000546411 DCUN1D1Q96GG9 259 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 B3GALT6Q96L58 329 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 BRD8Q9H0E9 1235 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 R3HDMLQ9H3Y0 253 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 RUBCNLQ9H714 662 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 SEMA4BQ9NPR2 832 aaPredicted RBP15.89■□□□□ 0.13
CUX1-211ENST00000546411 PIGVQ9NUD9 493 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 TAS2R1Q9NYW7 299 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 WWOXQ9NZC7 414 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 UXTQ9UBK9 157 aaPredicted RBP15.89■□□□□ 0.13
CUX1-211ENST00000546411 MYH7BA7E2Y1 1941 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 SYCE1LA8MT33 242 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 MGRN1O60291 552 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 RGS4P49798 205 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 NFYCQ13952 458 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 CDCA2Q69YH5 1023 aaPredicted RBP15.89■□□□□ 0.13
CUX1-211ENST00000546411 ZNF786Q8N393 782 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 DCAKDQ8WVC6 231 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 SEPHS2Q99611 448 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 SENP6Q9GZR1 1112 aaPredicted RBP15.89■□□□□ 0.13
CUX1-211ENST00000546411 BPIFA1Q9NP55 256 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 NMRK2Q9NPI5 230 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 GID8Q9NWU2 228 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 COPG2Q9UBF2 871 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 STRCP1A6NGW2 1772 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 GON4LQ3T8J9 2241 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 HDAC3O15379 428 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 LGR5O75473 907 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 COX4I1P13073 169 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 SKIV2L2P42285 1042 aaKnown RBP15.89■□□□□ 0.13
CUX1-211ENST00000546411 RAB27AP51159 221 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 MPP1Q00013 466 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 RCN3Q96D15 328 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 ECSITQ9BQ95 431 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 BCO2Q9BYV7 579 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 TM6SF2Q9BZW4 377 aa15.89■□□□□ 0.13
CUX1-211ENST00000546411 N4BP2Q86UW6 1770 aaPredicted RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 ATXN2Q99700 1313 aaKnown RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 SLCO1B7G3V0H7 640 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 MRASO14807 208 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 ESRRBO95718 433 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 CRABP2P29373 138 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 CRHR1P34998 444 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 CHRNA4P43681 627 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 GRM3Q14832 879 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 NAIF1Q69YI7 327 aaPredicted RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 RHBDF2Q6PJF5 856 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 OLFML1Q6UWY5 402 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 MFN1Q8IWA4 741 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 DENND6AQ8IWF6 608 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 SNX31Q8N9S9 440 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 OR6Y1Q8NGX8 325 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 SOCS4Q8WXH5 440 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 SPATA17Q96L03 361 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 CADM1Q9BY67 442 aaKnown RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 BTN3A1O00481 513 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 H2AFYO75367 372 aaKnown RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 CYBBP04839 570 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 IQCF3P0C7M6 154 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 TPSB2P20231 275 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 ME2P23368 584 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 EEF1DP29692 281 aaKnown RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 GRK4P32298 578 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 GALNT3Q14435 633 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 TPSAB1Q15661 275 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 LRRC23Q53EV4 343 aaPredicted RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 FSTL4Q6MZW2 842 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 HPS6Q86YV9 775 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 ACMSDQ8TDX5 336 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 WDR41Q9HAD4 459 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 PRKAG2Q9UGJ0 569 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 SLC12A4Q9UP95 1085 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 USP54Q70EL1 1684 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 ARHGAP10A1A4S6 786 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 CRTAMO95727 393 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 SERPINA6P08185 405 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 NMBRP28336 390 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 LAMB3Q13751 1172 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 ESRP1Q6NXG1 681 aaKnown RBP15.88■□□□□ 0.13
CUX1-211ENST00000546411 TAC4Q86UU9 113 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 FBXO39Q8N4B4 442 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 ACOX2Q99424 681 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 C17orf80Q9BSJ5 609 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 PRKD2Q9BZL6 878 aa15.88■□□□□ 0.13
CUX1-211ENST00000546411 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.88■□□□□ 0.131e-6■■■■□ 23.3
CUX1-211ENST00000546411 KPNA6O60684 536 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 GCATO75600 419 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 NR6A1Q15406 480 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 ZBTB49Q6ZSB9 765 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms