RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TLR1Q15399 786 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 PPP1R3AQ16821 1122 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 C6orf52Q5T4I8 152 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 GK5Q6ZS86 529 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 TMEM135Q86UB9 458 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 TTC39CQ8N584 583 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 BHLHE22Q8NFJ8 381 aaPredicted RBP15.29■□□□□ 0.04
USP28-214ENST00000545540 PPP2R3CQ969Q6 453 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 OCEL1Q9H607 264 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 DNAJC28Q9NX36 388 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 ADA2Q9NZK5 511 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 CDY2AQ9Y6F7 541 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 CDY1Q9Y6F8 540 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 SF3B1O75533 1304 aaKnown RBP eCLIP15.29■□□□□ 0.048e-6■■■■■ 107
USP28-214ENST00000545540 DNAJA2O60884 412 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 FKBP6O75344 327 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 CYP2B6P20813 491 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 ALDH1A3P47895 512 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 INHBEP58166 350 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 MAXP61244 160 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 RALGDSQ12967 914 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 CEACAM7Q14002 265 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 FLOT2Q14254 428 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 PDK3Q15120 406 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 UBXN11Q5T124 520 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 SDHAF4Q5VUM1 108 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 RAB3IL1Q8TBN0 382 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 SH3RF2Q8TEC5 729 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 SLC39A3Q9BRY0 314 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 DAB1O75553 588 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 PPIL2Q13356 520 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 SEL1L3Q68CR1 1132 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 C4orf22Q6V702 233 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 CYP2R1Q6VVX0 501 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 FASTKD5Q7L8L6 764 aaKnown RBP15.28■□□□□ 0.04
USP28-214ENST00000545540 SPATA24Q86W54 205 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 FICDQ9BVA6 458 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 TRIM8Q9BZR9 551 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 CLEC11AQ9Y240 323 aa15.28■□□□□ 0.04
USP28-214ENST00000545540 GRID2O43424 1007 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 DLX3O60479 287 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 KCNA5P22460 613 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 CSHL1Q14406 222 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 CCL14Q16627 93 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 CMPK2Q5EBM0 449 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 SH2D4BQ5SQS7 431 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 GPR142Q7Z601 462 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 ZNF410Q86VK4 478 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 MAML3Q96JK9 1138 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 HNRNPABQ99729 332 aaKnown RBP15.27■□□□□ 0.04
USP28-214ENST00000545540 OXSMQ9NWU1 459 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 UBAP1Q9NZ09 502 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 IGSF9Q9P2J2 1179 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 KCNH4Q9UQ05 1017 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 AHCYL1O43865 530 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 PGK1P00558 417 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 POMCP01189 267 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 SLC35E2BP0CK96 405 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 PMLP29590 882 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 TBCCQ15814 346 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 KYAT1Q16773 422 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 DUSP28Q4G0W2 176 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 RBM20Q5T481 1227 aaKnown RBP15.27■□□□□ 0.04
USP28-214ENST00000545540 CWF19L1Q69YN2 538 aaKnown RBP15.27■□□□□ 0.04
USP28-214ENST00000545540 CENPLQ8N0S6 344 aaPredicted RBP15.27■□□□□ 0.04
USP28-214ENST00000545540 LILRA2Q8N149 483 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 ELMO2Q96JJ3 720 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 GIMAP2Q9UG22 337 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 DTNAQ9Y4J8 743 aa15.27■□□□□ 0.04
USP28-214ENST00000545540 KCNU1A8MYU2 1149 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 CD4P01730 458 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 UQCRBP14927 111 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 RPL10P27635 214 aaKnown RBP15.27■□□□□ 0.03
USP28-214ENST00000545540 BRCC3P46736 316 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 RPL14P50914 215 aaKnown RBP15.27■□□□□ 0.03
USP28-214ENST00000545540 DAOAP59103 153 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 PAFAH1B3Q15102 231 aaKnown RBP15.27■□□□□ 0.03
USP28-214ENST00000545540 CCDC153Q494R4 210 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 ZC3HC1Q86WB0 502 aaKnown RBP15.27■□□□□ 0.03
USP28-214ENST00000545540 TMEM151AQ8N4L1 468 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 ICA1LQ8NDH6 482 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 FAM110BQ8TC76 370 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 ZNF560Q96MR9 790 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 PHF12Q96QT6 1004 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 TINF2Q9BSI4 451 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 IL1RL2Q9HB29 575 aa15.27■□□□□ 0.03
USP28-214ENST00000545540 NRCAMQ92823 1304 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 CCL15-CCL14A0A0B4J2E2 113 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 MTTPP55157 894 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 ART3Q13508 389 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 CCL15Q16663 113 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 SV2CQ496J9 727 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 LIN52Q52LA3 116 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 ZNF354CQ86Y25 554 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 LSMEM2Q8N112 164 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 GALNT15Q8N3T1 639 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 OR9I1Q8NGQ6 314 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 TSPYL2Q9H2G4 693 aaPredicted RBP15.26■□□□□ 0.03
USP28-214ENST00000545540 GPAMQ9HCL2 828 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 VTA1Q9NP79 307 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms